Browse Element(s) Details


Os.54870.1.S1_at

Description gb:AK106963.1
DB_XREF= gi:32992172
TID=Os.54870.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F08, full insert sequence.
FL= gb:AK106963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0881010/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08750Os.14290.1.S1_at11/116+4378814..4382419integral membrane transporter family protein, putative, expressed
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed
LOC_Os06g08800OsAffx.4772.1.S1_at11/116+4400652..4402236lmbW protein, putative
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g08840Os.7772.1.S1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_x_at11/116+4427667..4431315RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0050378molecular_functionUDP-glucuronate 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54870.1.S1_at--1035--3991Chr06:4404055..4404078 (24 bp)
CGTGATCACGTCGACATCGCCAGGG
LOC_Os06g08810
Os.54870.1.S1_at--232--2091Chr06:4403631..4404065 (25 bp)
ACATCGCCAGGGACTTCACCTACAT
LOC_Os06g08810
Os.54870.1.S1_at--293--4071Chr06:4403433..4403457 (25 bp)
CGAGGAGGCACGTCGTCGAGATGCC
LOC_Os06g08810
Os.54870.1.S1_at--973--1811Chr06:4403382..4403406 (25 bp)
ACGCCAACATCAGCCTGGCGAGGGA
LOC_Os06g08810
Os.54870.1.S1_at--68--3571Chr06:4403375..4403399 (25 bp)
CATCAGCCTGGCGAGGGAGCAGCTC
LOC_Os06g08810
Os.54870.1.S1_at--505--1511NONE
AGCAGCTCGGGTACAGGCCGACGAC
NONE
Os.54870.1.S1_at--215--9891Chr06:4403287..4403311 (25 bp)
TACTACGGCTACAACAGAGGAACTC
LOC_Os06g08810
Os.54870.1.S1_at--516--6191Chr06:4403271..4403295 (25 bp)
GAGGAACTCACGCATTCAGGAGCCG
LOC_Os06g08810
Os.54870.1.S1_at--1017--9631Chr06:4403256..4403280 (25 bp)
TCAGGAGCCGCTTGTGATGACGATT
LOC_Os06g08810
Os.54870.1.S1_at--1129--4511Chr06:4403250..4403274 (25 bp)
GCCGCTTGTGATGACGATTATATAA
LOC_Os06g08810
Os.54870.1.S1_at--164--6791Chr06:4403222..4403246 (25 bp)
GTTAGTATAGTTAGCATTAGTGAAT
LOC_Os06g08810
Target Sequence 
CGTGATCACGTCGACATCGCCAGGGACTTCACCTACATCGACGACATCGTGCGGGGGTGCCTGGCGGCGCTGGACACGGC
TGGGCGGAGCACGGGCGGGGGCGGGAGGAAGCGCGGGGCGGCGCCGTACAGGATCTTCAACCTCGGGAACACGTCGCCGG
TGACGGTGCCGGCGCTGGTGGCGATGCTGGAGAGGTGCCTGATGGTGAAGGCGAGGAGGCACGTCGTCGAGATGCCCGGC
AATGGCGACGTGCCCTTCACCCACGCCAACATCAGCCTGGCGAGGGAGCAGCTCGGGTACAGGCCGACGACCAGCCTCGA
GATGGGGCTCAAGAAGTTCGTCCGGTGGTACCTCTCCTACTACGGCTACAACAGAGGAACTCACGCATTCAGGAGCCGCT
TGTGATGACGATTATATAAATTGTTAGTATAGTTAGCATTAGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis