Browse Element(s) Details


Os.54932.1.S1_at

Description gb:AK107125.1
DB_XREF= gi:32992334
TID=Os.54932.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B10, full insert sequence.
FL= gb:AK107125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0703011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06980Os.14598.1.S1_at10/1112+3401730..3412835SAP domain containing protein, expressed
LOC_Os12g06990NANA12+3418093..3418648hypothetical protein
LOC_Os12g07000NANA12+3426729..3427016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g07010Os.5507.1.S1_at11/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07010Os.22696.2.S1_x_at2/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07020Os.19306.1.S1_at10/1112+3430913..34362215-formyltetrahydrofolate cyclo-ligase family protein, putative, expressed
LOC_Os12g07030Os.54932.1.S1_at11/1112+3436393..3439087expressed protein
LOC_Os12g07039NANA12+3441236..3441570NA
LOC_Os12g07050Os.18523.1.S1_at10/1112+3449066..3453049Ssu72-like protein, expressed
LOC_Os12g07060Os.35805.1.S1_at11/1112+3454590..3462155DnaJ C terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54932.1.S1_at--645--9091Chr12:3436969..3436993 (25 bp)
TGCTCTACAGCTTCGAGGGAGACGC
LOC_Os12g07030
Os.54932.1.S1_at--720--4131Chr12:3436832..3436856 (25 bp)
CGCGACACGGACACGTAGGGTTAAT
LOC_Os12g07030
Os.54932.1.S1_at--211--3071Chr12:3436810..3436834 (25 bp)
AATCACGATGTGATCCTGAGCGGAA
LOC_Os12g07030
Os.54932.1.S1_at--450--4431Chr12:3436761..3436785 (25 bp)
GCCTACTTTTGCCAGGTGCGGTCAA
LOC_Os12g07030
Os.54932.1.S1_at--72--7291Chr12:3436746..3436770 (25 bp)
GTGCGGTCAACGGTCAACCTGAAGT
LOC_Os12g07030
Os.54932.1.S1_at--823--8491Chr12:3436716..3436740 (25 bp)
TGGCATGCCACGTAATGCGGCGGTC
LOC_Os12g07030
Os.54932.1.S1_at--31--3031Chr12:3436703..3436727 (25 bp)
AATGCGGCGGTCAACGGGTTCAGAC
LOC_Os12g07030
Os.54932.1.S1_at--579--10771Chr12:3436609..3436633 (25 bp)
TTGTTCGTCAAATTCTCAGAGGGCC
LOC_Os12g07030
Os.54932.1.S1_at--806--9631Chr12:3436594..3436618 (25 bp)
TCAGAGGGCCACATAGTTGCAGGAG
LOC_Os12g07030
Os.54932.1.S1_at--400--10391Chr12:3436544..3436568 (25 bp)
TTTTCGTAAAATTCATCGCTCCAAA
LOC_Os12g07030
Os.54932.1.S1_at--1072--371Chr12:3436516..3436540 (25 bp)
ATCACACATCTCAAGCTTGTACGAA
LOC_Os12g07030
Target Sequence 
TGCTCTACAGCTTCGAGGGAGACGCTGCTTCCGCCGCCTGCCTCTGGCAGCCGGAGAGCGGCGGCGGCGGGATGGGGTGG
CCGGCGACTTCGCCGGCGGCGTGGTTGGAGTACGGTTTCTACCCGCCGCCGGAGCGGCGCGACACGGACACGTAGGGTTA
ATCACGATGTGATCCTGAGCGGAATAGGCGGTGACGCTGACAGGTGGGGCCTACTTTTGCCAGGTGCGGTCAACGGTCAA
CCTGAAGTTGACGTGGCATGCCACGTAATGCGGCGGTCAACGGGTTCAGACGGAAGTGGGTCATGGACGGCACGAGACGC
CGTCAGAAATAAATGCTCGAAACTGACACGATGGATTACATTGTTCGTCAAATTCTCAGAGGGCCACATAGTTGCAGGAG
GGGGAATTATTATTCAGCATTGTTTTTTTCGTAAAATTCATCGCTCCAAAAACATCACACATCTCAAGCTTGTACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis