Browse Element(s) Details


Os.54938.1.S1_at

Description gb:AK107140.1
DB_XREF= gi:32992349
TID=Os.54938.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D02, full insert sequence.
FL= gb:AK107140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0577011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05750OsAffx.7007.1.S1_at11/1111+2633341..2635005hypothetical protein
LOC_Os11g05760Os.53800.1.S1_at11/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05760Os.53962.1.S1_at1/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05770Os.54938.1.S1_at11/1111+2654947..2656312uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os11g05780OsAffx.19517.2.S1_at11/1111+2661590..2662318uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os11g05790OsAffx.24994.1.S1_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05790OsAffx.24994.2.S1_s_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05800OsAffx.30833.1.S1_at10/1111+2678664..2683254TB2/DP1, HVA22 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54938.1.S1_at--334--2971Chr11:2655939..2655963 (25 bp)
AATGGAGCCATGTCCATGCGGCGGT
LOC_Os11g05770
Os.54938.1.S1_at--782--6431Chr11:2655965..2655989 (25 bp)
GATCATCCGATGATCTCGAGGAAGA
LOC_Os11g05770
Os.54938.1.S1_at--557--8831Chr11:2656010..2656034 (25 bp)
TGATCTCACTGGGAGCTAGCAGCTG
LOC_Os11g05770
Os.54938.1.S1_at--961--5071Chr11:2656042..2656066 (25 bp)
GCACCAAGTACATTTGCTAATTCTT
LOC_Os11g05770
Os.54938.1.S1_at--1027--4831Chr11:2656057..2656081 (25 bp)
GCTAATTCTTGATTAATTCTGCTAA
LOC_Os11g05770
Os.54938.1.S1_at--883--8611Chr11:2656094..2656118 (25 bp)
TGGTGATTAATCCAGCAGATATCCT
LOC_Os11g05770
Os.54938.1.S1_at--518--10191Chr11:2656196..2656220 (25 bp)
TATAGTATTTACAACCTGGTGCACA
LOC_Os11g05770
Os.54938.1.S1_at--404--9031Chr11:2656215..2656239 (25 bp)
TGCACATATATAGGTTGGAGGGATC
LOC_Os11g05770
Os.54938.1.S1_at--769--8011Chr11:2656231..2656255 (25 bp)
GGAGGGATCCAATGTACCATATAGA
LOC_Os11g05770
Os.54938.1.S1_at--594--1071Chr11:2656263..2656287 (25 bp)
AGGGAGCTCCATACTGTATTATGAA
LOC_Os11g05770
Os.54938.1.S1_at--192--3011Chr11:2656288..2656312 (25 bp)
AATGAGATACTAGCTTTGACTTTTC
LOC_Os11g05770
Target Sequence 
AATGGAGCCATGTCCATGCGGCGGTGGATCATCCGATGATCTCGAGGAAGAAGAAGAAGAAGCAAGAGTGATGATCTCAC
TGGGAGCTAGCAGCTGCAGCTTAGCACCAAGTACATTTGCTAATTCTTGATTAATTCTGCTAATTAATTTGATCTTGGTG
ATTAATCCAGCAGATATCCTGGAATTAGATCTGAAAAATGTACGTTTTTTTTTGGAATTTTTTTAGTTTGGTTTTATGTT
TTTTTTTGTCTTGATAGTATAGTATTTACAACCTGGTGCACATATATAGGTTGGAGGGATCCAATGTACCATATAGAATT
AATTAGGGAGCTCCATACTGTATTATGAAAATGAGATACTAGCTTTGACTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis