Browse Element(s) Details


Os.54940.1.S1_at

Description gb:AK107142.1
DB_XREF= gi:32992351
TID=Os.54940.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D04, full insert sequence.
FL= gb:AK107142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4415011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g44160OsAffx.26452.1.S1_at11/114+25919936..25920142hypothetical protein
LOC_Os04g44170NANA4+25929178..25929798hypothetical protein
LOC_Os04g44180OsAffx.4082.1.S1_at11/114+25934535..25938038hypothetical protein
LOC_Os04g44190Os.52615.1.S1_at11/114+25939763..25947697expressed protein
LOC_Os04g44190Os.51599.2.S1_at10/114+25939763..25947697expressed protein
LOC_Os04g44190Os.53813.1.S1_at1/114+25939763..25947697expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009693biological_processethylene biosynthesis
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54940.1.S1_at--1138--1751Chr04:25912318..25912342 (25 bp)
ACCTGATGAAGGACTCCCGGTGGGT
LOC_Os04g44150
Os.54940.1.S1_at--204--2511Chr04:25912262..25912283 (22 bp)
AACATCGGCGATCTGTTTCAGGCGT
LOC_Os04g44150
Os.54940.1.S1_at--32--9951Chr04:25911962..25911986 (25 bp)
TACGACTCGCTTGTCGGGACATGCG
LOC_Os04g44150
Os.54940.1.S1_at--93--5871Chr04:25911935..25911959 (25 bp)
GAGCCATCGCCATACAGGGCCTTCA
LOC_Os04g44150
Os.54940.1.S1_at--496--8451Chr04:25911852..25911876 (25 bp)
TGGCCTCCCAAACTTTTTCAAGCAT
LOC_Os04g44150
Os.54940.1.S1_at--1107--5631Chr04:25911799..25911823 (25 bp)
GACAGCAACCGCTTGTTCTATATAT
LOC_Os04g44150
Os.54940.1.S1_at--1153--771Chr04:25911753..25911777 (25 bp)
ATGTGAACTCGACCGTACCATCAAT
LOC_Os04g44150
Os.54940.1.S1_at--315--3571Chr04:25911735..25911759 (25 bp)
CATCAATCCATCTCACTGTACAATT
LOC_Os04g44150
Os.54940.1.S1_at--98--3891Chr04:25911720..25911744 (25 bp)
CTGTACAATTGTGTGTGCGGTGTTC
LOC_Os04g44150
Os.54940.1.S1_at--437--7591Chr04:25911694..25911718 (25 bp)
GGGTTGGAGGTTCTTTCCTTATCAT
LOC_Os04g44150
Os.54940.1.S1_at--874--10351Chr04:25911676..25911700 (25 bp)
TTATCATTTCCGTGGCCTTTTTTGG
LOC_Os04g44150
Target Sequence 
ACCTGATGAAGGACTCCCGGTGGGTGGCCGTCAGGCCACGCCCCGACGCCCTCGTCGTCAACATCGGCGATCTGTTTCAG
GCGTGGAGCAACAACAGGTACAAGAGCGTGGAGCATAAAGTGGTGGCCAACGCCAAGACGGGCCGGCTATCGGTGGCCTA
CTTCCTGTGCCCGTCCTACGACTCGCTTGTCGGGACATGCGGCGAGCCATCGCCATACAGGGCCTTCACCTTCGGGGAGT
ACAGGAAGAAGGTGCAGGAAGACGTCAGGACAACCGGGAAAAAGATTGGCCTCCCAAACTTTTTCAAGCATTCTTCAGTA
CAATAATGATCGCATCAATGACAGCAACCGCTTGTTCTATATATGTTCGTTATAATTTATGGTCGATGTGAACTCGACCG
TACCATCAATCCATCTCACTGTACAATTGTGTGTGCGGTGTTCGGGGTTGGAGGTTCTTTCCTTATCATTTCCGTGGCCT
TTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis