Browse Element(s) Details


Os.54952.1.S1_at

Description gb:AK107173.1
DB_XREF= gi:32992382
TID=Os.54952.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G06, full insert sequence.
FL= gb:AK107173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0729011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07250OsAffx.1647.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.20565.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.1412.2.S1_at1/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07260NANA9+3558989..3559863retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07270NANA9+3560254..3564646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07280OsAffx.17589.1.S1_at11/119+3576888..3579495hypothetical protein
LOC_Os09g07280Os.56124.1.S1_at7/119+3576888..3579495hypothetical protein
LOC_Os09g07280OsAffx.21595.1.S1_x_at1/119+3576888..3579495hypothetical protein
LOC_Os09g07290Os.54952.1.S1_at11/119+3580289..3585027GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54952.1.S1_at--394--8751Chr09:3581804..3581828 (25 bp)
TGTACAACATGGTGGCTCTGAGCTT
LOC_Os09g07290
Os.54952.1.S1_at--1050--7531Chr09:3581793..3581817 (25 bp)
GTGGCTCTGAGCTTCAACGCAAGGC
LOC_Os09g07290
Os.54952.1.S1_at--596--2771Chr09:3581766..3581790 (25 bp)
AAGAGGCTTATTGGGAGGCTCAACT
LOC_Os09g07290
Os.54952.1.S1_at--822--8812Chr01:14213199..14213645 (25 bp)
TGTTGATCAGTACAGCATCCTCTCT
NONE
Os.54952.1.S1_at--414--931Chr09:3580478..3580502 (25 bp)
AGGAATTCTATGTGCCTTGGACGAT
LOC_Os09g07290
Os.54952.1.S1_at--705--3611Chr09:3580463..3580487 (25 bp)
CTTGGACGATGCGTTGGCATGCGAC
LOC_Os09g07290
Os.54952.1.S1_at--79--10131Chr09:3580426..3580450 (25 bp)
TATGTATTCTTTGATGCTGTCCATC
LOC_Os09g07290
Os.54952.1.S1_at--668--4731Chr09:3580411..3580435 (25 bp)
GCTGTCCATCCATCGGAAAGGGCGT
LOC_Os09g07290
Os.54952.1.S1_at--903--631Chr09:3580371..3580395 (25 bp)
ATGCATTTATAAACACCACCTCACC
LOC_Os09g07290
Os.54952.1.S1_at--561--1751Chr09:3580354..3580378 (25 bp)
ACCTCACCTGTATTCCACTGAATTA
LOC_Os09g07290
Os.54952.1.S1_at--14--9431Chr09:3580314..3580338 (25 bp)
TCGTGATATTATCTGAACGCTCAAA
LOC_Os09g07290
Target Sequence 
TGTACAACATGGTGGCTCTGAGCTTCAACGCAAGGCTCAAGAGGCTTATTGGGAGGCTCAACTGGGAGCTGCCAGGGGCA
CAAGTAGAGTATGTTGATCAGTACAGCATCCTCTCTGCCATCATTGCCAAGCCATGGGAATATGGTTTTGGGAACTCAAT
GCAAGGATGTTGTGGCACGGGATTTGTGGAGACAGGAATTCTATGTGCCTTGGACGATGCGTTGGCATGCGACGATGCTG
ATAAATATGTATTCTTTGATGCTGTCCATCCATCGGAAAGGGCGTACAAGATCATAGCCGATGCATTTATAAACACCACC
TCACCTGTATTCCACTGAATTAAAAAATATATTTCACTCGTGATATTATCTGAACGCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis