Browse Element(s) Details


Os.5893.1.S1_at

Description gb:AK059400.1
DB_XREF= gi:32969418
TID=Os.5893.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B03, full insert sequence.
FL= gb:AK059400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0730011/11auxin transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07270NANA9+3560254..3564646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07280OsAffx.17589.1.S1_at11/119+3576888..3579495hypothetical protein
LOC_Os09g07280Os.56124.1.S1_at7/119+3576888..3579495hypothetical protein
LOC_Os09g07280OsAffx.21595.1.S1_x_at1/119+3576888..3579495hypothetical protein
LOC_Os09g07290Os.54952.1.S1_at11/119+3580289..3585027GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07310NANA9+3612475..3613459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07320Os.38305.1.A2_a_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.47340.1.S1_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.38305.1.A1_s_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.52782.1.S1_at1/119+3619063..3632198expressed protein
LOC_Os09g07320Os.40082.1.A1_x_at1/119+3619063..3632198expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0048364biological_processroot development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5893.1.S1_at--329--7711Chr09:3585841..3585865 (25 bp)
GGTGCAAAGAGCTGAACGAAGTTTT
LOC_Os09g07300
Os.5893.1.S1_at--184--4711Chr09:3585831..3585855 (25 bp)
GCTGAACGAAGTTTTCCGAGGATCT
LOC_Os09g07300
Os.5893.1.S1_at--665--6771Chr09:3585821..3585845 (25 bp)
GTTTTCCGAGGATCTACAATTTGTG
LOC_Os09g07300
Os.5893.1.S1_at--437--6171Chr09:3585814..3585838 (25 bp)
GAGGATCTACAATTTGTGTTGAAAC
LOC_Os09g07300
Os.5893.1.S1_at--466--10691Chr09:3585788..3585812 (25 bp)
TTGCCACGCGCCTGTATGTTTGTAA
LOC_Os09g07300
Os.5893.1.S1_at--1057--6491Chr09:3585762..3585786 (25 bp)
GATAGTCAGCTTTTGTGTGGCAGCT
LOC_Os09g07300
Os.5893.1.S1_at--482--4891Chr09:3585754..3585778 (25 bp)
GCTTTTGTGTGGCAGCTGTAAACAT
LOC_Os09g07300
Os.5893.1.S1_at--300--7051Chr09:3585737..3585761 (25 bp)
GTAAACATTATAATTCTTCCTTGTA
LOC_Os09g07300
Os.5893.1.S1_at--12--8971Chr09:3585709..3585733 (25 bp)
TGAAACTGGGCAAGGTTTGTATGCT
LOC_Os09g07300
Os.5893.1.S1_at--325--91Chr09:3585649..3585673 (25 bp)
ATTCCTTGCTCCACCTGCAATTGAA
LOC_Os09g07300
Os.5893.1.S1_at--590--3631Chr09:3585645..3585669 (25 bp)
CTTGCTCCACCTGCAATTGAAGAAC
LOC_Os09g07300
Target Sequence 
GGTGCAAAGAGCTGAACGAAGTTTTCCGAGGATCTACAATTTGTGTTGAAACTTTGCCACGCGCCTGTATGTTTGTAAGG
ATAGTCAGCTTTTGTGTGGCAGCTGTAAACATTATAATTCTTCCTTGTAAAATGAAACTGGGCAAGGTTTGTATGCTNAG
CTTTTGTCCTGGNCATTTACCAGCCNNCCNATTCACNATTCCTTGCTCCACCTGCAATTGAAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis