Browse Element(s) Details


Os.47340.1.S1_at

Description gb:AK100378.1
DB_XREF= gi:32985587
TID=Os.47340.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085B20, full insert sequence.
FL= gb:AK100378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0732011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07310NANA9+3612475..3613459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07320Os.38305.1.A2_a_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.47340.1.S1_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.38305.1.A1_s_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.52782.1.S1_at1/119+3619063..3632198expressed protein
LOC_Os09g07320Os.40082.1.A1_x_at1/119+3619063..3632198expressed protein
LOC_Os09g07330Os.14491.2.S1_x_at2/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07330OsAffx.8135.1.S1_at1/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07340NANA9+3649452..3652733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07350Os.49544.1.S1_at11/119+3653972..3657609Fasciclin domain containing protein, expressed
LOC_Os09g07360Os.7881.2.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_a_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_x_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360OsAffx.17590.1.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47340.1.S1_at--56--9933Chr09:3623214..3623238 (25 bp)
TACTGTCGTTGTAGCAGCAGCTCTG
LOC_Os09g07320
Os.47340.1.S1_at--6--1591Chr09:3623232..3623256 (25 bp)
AGCTCTGGGCTACTGCTAAGGTCAG
LOC_Os09g07320
Os.47340.1.S1_at--1084--9074Chr09:3623245..3623269 (25 bp)
TGCTAAGGTCAGTCGCCATGGCCAT
LOC_Os09g07320
Os.47340.1.S1_at--334--6671Chr09:3623281..3623305 (25 bp)
GTTGCAGCATAAATTTCCTCCTATA
LOC_Os09g07320
Os.47340.1.S1_at--56--6911Chr09:3623357..3623381 (25 bp)
GTATCTACTTCATTCATGGTCATGT
LOC_Os09g07320
Os.47340.1.S1_at--1151--10171Chr09:3623393..3623417 (25 bp)
TATATTATGCCCACCCTACGTTACT
LOC_Os09g07320
Os.47340.1.S1_at--302--2611Chr09:3623552..3623576 (25 bp)
AACGCCCTTTGCATCCTATGGTGGA
LOC_Os09g07320
Os.47340.1.S1_at--904--9033Chr09:3623577..3623601 (25 bp)
TGCACCTTGCATCTGTCCATGCTAA
LOC_Os09g07320
Os.47340.1.S1_at--823--9233Chr09:3623592..3623616 (25 bp)
TCCATGCTAACCTTCTTTGCTATAT
LOC_Os09g07320
Os.47340.1.S1_at--1100--9732Chr09:3623672..3623696 (25 bp)
TAATTCTTATCTTTCCCTTCTTTCT
LOC_Os09g07320
Os.47340.1.S1_at--670--6471Chr09:3623774..3623798 (25 bp)
GATACAATCTCTCTGCCCTAATGAT
LOC_Os09g07320
Target Sequence 
TACTGTCGTTGTAGCAGCAGCTCTGGGCTACTGCTAAGGTCAGTCGCCATGGCCATCCAAAGCAGCAGTTGCAGCATAAA
TTTCCTCCTATATGAATCCTCTATTAAGAAAAATATCAACAATACAATCGGTAATGTTTAATTGTATCTACTTCATTCAT
GGTCATGTTTTCCAAATATTATATTATGCCCACCCTACGTTACTTGCTTTGCAATTTCTTCCATAAGAACAAAACAATAT
CATATTTTCTGCAGACTATCAGGGACTGAGTTCAGCAATGAACTTAATTTAGGTAAATATTGGTCCTTGGATCTGTTCAT
TTTTTTTAGATGAAGGGCAACGCCCTTTGCATCCTATGGTGGATGCACCTTGCATCTGTCCATGCTAACCTTCTTTGCTA
TATGATGTTCTTACTTAACATACGGGTTAATAAGCTACAGTTTGTGATGGATGTAACTTAATTCTTATCTTTCCCTTCTT
TCTTAGTAGAATATAAAGGATGCTCTTTGTAATAGCACACAATTGAACATAATAGGGGATTCATCATTTATGTTTCTATC
GATACAATCTCTCTGCCCTAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis