Browse Element(s) Details


Os.49544.1.S1_at

Description gb:AK105777.1
DB_XREF= gi:32990986
TID=Os.49544.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F09, full insert sequence.
FL= gb:AK061377.1 gb:AK105777.1 gb:AK068535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0735011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07320Os.38305.1.A2_a_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.47340.1.S1_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.38305.1.A1_s_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.52782.1.S1_at1/119+3619063..3632198expressed protein
LOC_Os09g07320Os.40082.1.A1_x_at1/119+3619063..3632198expressed protein
LOC_Os09g07330Os.14491.2.S1_x_at2/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07330OsAffx.8135.1.S1_at1/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07340NANA9+3649452..3652733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07350Os.49544.1.S1_at11/119+3653972..3657609Fasciclin domain containing protein, expressed
LOC_Os09g07360Os.7881.2.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_a_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_x_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360OsAffx.17590.1.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07370OsAffx.29745.1.S1_at10/119+3665875..3666428hypothetical protein
LOC_Os09g07380Os.14576.1.S1_at11/119+3669040..3674537ABI3-interacting protein 2, putative, expressed
LOC_Os09g07380Os.7881.1.S1_a_at2/119+3669040..3674537ABI3-interacting protein 2, putative, expressed
LOC_Os09g07380Os.7881.1.S1_x_at1/119+3669040..3674537ABI3-interacting protein 2, putative, expressed
LOC_Os09g07390NANA9+3675722..3676558hypothetical protein
LOC_Os09g07400NANA9+3678241..3680586Zinc knuckle family protein
LOC_Os09g07410NANA9+3681265..3686451retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49544.1.S1_at--772--9771Chr09:3657042..3657066 (25 bp)
TACAGCTACGACGTCCAGAATAAGG
LOC_Os09g07350
Os.49544.1.S1_at--367--3071Chr09:3657060..3657084 (25 bp)
AATAAGGGCGAGACCGTCACGCTCG
LOC_Os09g07350
Os.49544.1.S1_at--100--2751Chr09:3657225..3657249 (25 bp)
AAGAAGCACAAGTCGGCGGCCGACG
LOC_Os09g07350
Os.49544.1.S1_at--431--8371Chr09:3657279..3657303 (25 bp)
GGCGACGTCAAAGCCCACAAGGGCG
LOC_Os09g07350
Os.49544.1.S1_at--328--4531Chr09:3657351..3657375 (25 bp)
GCCGCCGTAGCAGCATTGATGCTAA
LOC_Os09g07350
Os.49544.1.S1_at--886--8491Chr09:3657376..3657400 (25 bp)
TGGCTTGATGCATGAGTCAGTCAAT
LOC_Os09g07350
Os.49544.1.S1_at--898--7111Chr09:3657391..3657415 (25 bp)
GTCAGTCAATCTACACTCTACAGAG
LOC_Os09g07350
Os.49544.1.S1_at--676--5931Chr09:3657413..3657437 (25 bp)
GAGCAGAGTGTGTCGAATTTGTTTT
LOC_Os09g07350
Os.49544.1.S1_at--935--10291Chr09:3657443..3657467 (25 bp)
TTTCCTTTTTGGTATGGCTGGTCAA
LOC_Os09g07350
Os.49544.1.S1_at--808--9551Chr09:3657524..3657548 (25 bp)
TCTTTCTGTGGTGGTTTGATGTAAT
LOC_Os09g07350
Os.49544.1.S1_at--408--9751Chr09:3657560..3657584 (25 bp)
TAATATAGTTGTCCATAATCCACGG
LOC_Os09g07350
Target Sequence 
TACAGCTACGACGTCCAGAATAAGGGCGAGACCGTCACGCTCGACACCAGGGTNGTCAACTCCGCCGTCACCGCCACCGT
CGGCGACGCCGAGCCGCTCGCCGTCTACGCCGTCACCAAGTTCCTCAAGCCCAAGGAGCTNTACAAGGTCGTCGAGGCCC
CCGCGCCCGCGCCCGAGCCGTCCAAGAAGCACAAGTCGGCGGCCGACGACAGCAGCGACGACTCGTCGGACGATTCCGGC
GACGTCAAAGCCCACAAGGGCGCCGCCGCTCCGGCGCCGCTCGCCCGGTGGGTGACCGCCGCCGCGGCCGCCGCCGTAGC
AGCATTGATGCTAATGGCTTGATGCATGAGTCAGTCAATCTACACTCTACAGAGCAGAGTGTGTCGAATTTGTTTTTTTT
TTTTCCTTTTTGGTATGGCTGGTCAATTACAAATAAGAAACATAGATGTGTGAATGATTTGTAGTTCTTTGAGTTTTTTC
TTTCTTTCTGTGGTGGTTTGATGTAATTACTTTGTAATTAATATAGTTGTCCATAATCCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis