Browse Element(s) Details


OsAffx.17590.1.S1_at

Description tigr:9637.m00496
TID=OsAffx.17590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0736011/11ABI3-interacting protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07320Os.38305.1.A2_a_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.47340.1.S1_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.38305.1.A1_s_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.52782.1.S1_at1/119+3619063..3632198expressed protein
LOC_Os09g07320Os.40082.1.A1_x_at1/119+3619063..3632198expressed protein
LOC_Os09g07330Os.14491.2.S1_x_at2/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07330OsAffx.8135.1.S1_at1/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07340NANA9+3649452..3652733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07350Os.49544.1.S1_at11/119+3653972..3657609Fasciclin domain containing protein, expressed
LOC_Os09g07360Os.7881.2.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_a_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_x_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360OsAffx.17590.1.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07370OsAffx.29745.1.S1_at10/119+3665875..3666428hypothetical protein
LOC_Os09g07380Os.14576.1.S1_at11/119+3669040..3674537ABI3-interacting protein 2, putative, expressed
LOC_Os09g07380Os.7881.1.S1_a_at2/119+3669040..3674537ABI3-interacting protein 2, putative, expressed
LOC_Os09g07380Os.7881.1.S1_x_at1/119+3669040..3674537ABI3-interacting protein 2, putative, expressed
LOC_Os09g07390NANA9+3675722..3676558hypothetical protein
LOC_Os09g07400NANA9+3678241..3680586Zinc knuckle family protein
LOC_Os09g07410NANA9+3681265..3686451retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17590.1.S1_at--208--7031Chr09:3661419..3661443 (25 bp)
GTACAGGTGCACTTTTTTCATTTCA
LOC_Os09g07360
OsAffx.17590.1.S1_at--398--3571Chr09:3661326..3661350 (25 bp)
CATAGTAATCCTGGTCTGCTCTGAT
LOC_Os09g07360
OsAffx.17590.1.S1_at--1037--9231Chr09:3661265..3661289 (25 bp)
TCCATTTTTTCCCTCGAACATGCAG
LOC_Os09g07360
OsAffx.17590.1.S1_at--438--2271Chr09:3661189..3661213 (25 bp)
AAATCATTGCAAGACTTCCCTTAAA
LOC_Os09g07360
OsAffx.17590.1.S1_at--1054--6951Chr09:3661095..3661119 (25 bp)
GTAGCAATTCTGTTCGATGGATCGG
LOC_Os09g07360
OsAffx.17590.1.S1_at--1023--6391Chr09:3661076..3661100 (25 bp)
GATCGGTTGCCAGTTGGTGACACAT
LOC_Os09g07360
OsAffx.17590.1.S1_at--413--7771Chr09:3661061..3661085 (25 bp)
GGTGACACATGCATTCATTCTCTAA
LOC_Os09g07360
OsAffx.17590.1.S1_at--109--3711Chr09:3660955..3660979 (25 bp)
CTAGTATTCTTTCATGTGGCACCAT
LOC_Os09g07360
OsAffx.17590.1.S1_at--566--7531Chr09:3660940..3660964 (25 bp)
GTGGCACCATGACATCCTGTCACTA
LOC_Os09g07360
OsAffx.17590.1.S1_at--638--8731Chr09:3660923..3660947 (25 bp)
TGTCACTACAATCCACAAACGGCTC
LOC_Os09g07360
OsAffx.17590.1.S1_at--783--3811Chr09:3660901..3660925 (25 bp)
CTCCTCATGCTTCATACCTAGTATA
LOC_Os09g07360
Target Sequence 
GTACAGGTGCACTTTTTTCATTTCAATTTTAAACTGTATGATACCCTGTAAATTTTCTTTCACAGAACCAGGGTTCAAGA
TTGAAGTGGGAAACATAGTAATCCTGGTCTGCTCTGATTTTCTTTTTTTTTAAAAAGGCATGGTTTAATTTAGTTCCATT
TTTTCCCTCGAACATGCAGGAGGGAATTTAGTTGCGAAAATTATCACTAAGAATTTCAAAACCAAACACTAAATCATTGC
AAGACTTCCCTTAAAAAAAATCAATATACACCTGTAAAGGCTGAGTGAAAATGGAGTCGAAATGAACAGGATTGCTTGTA
GATTGTAGCAATTCTGTTCGATGGATCGGTTGCCAGTTGGTGACACATGCATTCATTCTCTAATTGAATACGATAAAAGT
TCTTTTTTCGTGAAAATTACGACAATATTGTGCTGGAGTATTTGGACTGAAAGCAACTTGTTCTCTAGTATTCTTTCATG
TGGCACCATGACATCCTGTCACTACAATCCACAAACGGCTCCTCATGCTTCATACCTAGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis