Browse Element(s) Details


Os.38305.1.A1_s_at

Description gb:AK120327.1
DB_XREF= gi:37989950
TID=Os.38305.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058A15, full insert sequence.
FL= gb:AK065068.1 gb:AK120327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0732011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07310NANA9+3612475..3613459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07320Os.38305.1.A2_a_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.47340.1.S1_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.38305.1.A1_s_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.52782.1.S1_at1/119+3619063..3632198expressed protein
LOC_Os09g07320Os.40082.1.A1_x_at1/119+3619063..3632198expressed protein
LOC_Os09g07330Os.14491.2.S1_x_at2/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07330OsAffx.8135.1.S1_at1/119+3643247..3648207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07340NANA9+3649452..3652733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07350Os.49544.1.S1_at11/119+3653972..3657609Fasciclin domain containing protein, expressed
LOC_Os09g07360Os.7881.2.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_a_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360Os.7881.1.S1_x_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed
LOC_Os09g07360OsAffx.17590.1.S1_at11/119+3655769..3664389ABI3-interacting protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38305.1.A1_s_at--465--7631Chr09:3620575..3620599 (25 bp)
GGGACGTTCGACTATTGAAGCATGA
LOC_Os09g07320
Os.38305.1.A1_s_at--532--8971Chr09:3620597..3620621 (25 bp)
TGAACGCAGCATCATTGCGGAGGAT
LOC_Os09g07320
Os.38305.1.A1_s_at--894--7811Chr09:3620669..3620693 (25 bp)
GGTCATATTCCTCAGCAAACACACT
LOC_Os09g07320
Os.38305.1.A1_s_at--861--9151Chr09:3620711..3620735 (25 bp)
TGCGCTTACTGTCCATCCAATCGGT
LOC_Os09g07320
Os.38305.1.A1_s_at--45--3111Chr09:3621120..3621144 (25 bp)
CAATCCTCGAATTGGTCCATGGCTC
LOC_Os09g07320
Os.38305.1.A1_s_at--487--7271Chr09:3621134..3621158 (25 bp)
GTCCATGGCTCCGTTTGATGCAAAA
LOC_Os09g07320
Os.38305.1.A1_s_at--75--2331Chr09:3621156..3621180 (25 bp)
AAAGATTGCGGTAGACCAAGGTCTT
LOC_Os09g07320
Os.38305.1.A1_s_at--395--3211Chr09:3621172..3621195 (24 bp)
CAAGGTCTTGTTCCAGAGTTTGAGA
LOC_Os09g07320
Os.38305.1.A1_s_at--905--6851Chr09:3620812..3621290 (25 bp)
GTTTGAGATTACACTGGAAGCTACT
LOC_Os09g07320
Os.38305.1.A1_s_at--1023--8511Chr09:3621280..3621304 (25 bp)
TGGAAGCTACTCACCATGGACCAGT
LOC_Os09g07320
Os.38305.1.A1_s_at--367--1171Chr09:3621302..3621326 (25 bp)
AGTCACCAATACACCAACGATGTTT
LOC_Os09g07320
Target Sequence 
GGGACGTTCGACTATTGAAGCATGAACGCAGCATCATTGCGGAGGATGATCTTGACAACCGGTGGCAGGCAGCCACTGGA
GAGGCTGTTTCTGAGGTCATATTCCTCAGCAAACACACTGCTGTCTCCAACCGTCCTGCGCTTACTGTCCATCCAATCGG
TGTGCCACATCTAAGAGAAGATGAGACGCCACCTCAAGGAGGGAGACCAGGATGGGCAGCTCTGCCCAATCCTCGAATTG
GTCCATGGCTCCGTTTGATGCAAAAGATTGCGGTAGACCAAGGTCTTGTTCCAGAGTTTGAGATTACACTGGAAGCTACT
CACCATGGACCAGTCACCAATACACCAACGATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38305.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis