Browse Element(s) Details


OsAffx.29744.1.S1_x_at

Description tigr:9637.m00488
TID=OsAffx.29744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0730011/11auxin transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07270NANA9+3560254..3564646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07280OsAffx.17589.1.S1_at11/119+3576888..3579495hypothetical protein
LOC_Os09g07280Os.56124.1.S1_at7/119+3576888..3579495hypothetical protein
LOC_Os09g07280OsAffx.21595.1.S1_x_at1/119+3576888..3579495hypothetical protein
LOC_Os09g07290Os.54952.1.S1_at11/119+3580289..3585027GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07310NANA9+3612475..3613459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07320Os.38305.1.A2_a_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.47340.1.S1_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.38305.1.A1_s_at11/119+3619063..3632198expressed protein
LOC_Os09g07320Os.52782.1.S1_at1/119+3619063..3632198expressed protein
LOC_Os09g07320Os.40082.1.A1_x_at1/119+3619063..3632198expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0048364biological_processroot development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29744.1.S1_x_at--328--9551Chr09:3586424..3586448 (25 bp)
TCTATCTGGAGCTCGTGGTGGTTCA
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--363--711Chr09:3586372..3586396 (25 bp)
ATGATGGTCAATTCTCTGCTGTCTG
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--29--7271Chr09:3586346..3586370 (25 bp)
GTCCTATGAGAGTTGGCTGCAGCAC
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--741--7591Chr09:3586301..3586325 (25 bp)
GGGCATCTACCATGCTTACATGCAA
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--463--10671Chr09:3586232..3586256 (25 bp)
TTCCTCTGCAGTCCGATCAGATGAA
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--837--6311Chr09:3586213..3586237 (25 bp)
GATGAAGGTTCATCCGCCGATTCAA
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--720--2791Chr09:3586180..3586204 (25 bp)
AAGAGGCTCTTTGCCATTGTCCAGC
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--243--3391Chr09:3586159..3586183 (25 bp)
CAGCCGATGCTGGTGTACACTGGTT
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--1095--2291Chr09:3586105..3586129 (25 bp)
AAAGGCAAATCGTCTGGCACGCAAA
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--1162--2331Chr09:3585979..3586003 (25 bp)
AAAGACGTGCTCTCATGGCTCGAAG
LOC_Os09g07300
OsAffx.29744.1.S1_x_at--25--8491Chr09:3585964..3585988 (25 bp)
TGGCTCGAAGACATGACCTCATCTG
LOC_Os09g07300
Target Sequence 
TCTATCTGGAGCTCGTGGTGGTTCAGGTTCCTCGGAGGAGACTGTACAGTTCATGATGGTCAATTCTCTGCTGTCTGAGT
CCTATGAGAGTTGGCTGCAGCACCGCCCCGCTTTCCTGCAGAGGGGCATCTACCATGCTTACATGCAACACAAGCATGGA
CGATCCACCCTCAAGCTTTCTGCCGACACGTCTTCCTCTGCAGTCCGATCAGATGAAGGTTCATCCGCCGATTCAAACGA
CAGCAAGAGGCTCTTTGCCATTGTCCAGCCGATGCTGGTGTACACTGGTTTGATTGAGCAGCTGCAGCAATTTTTCAAGA
AAGGCAAATCGTCTGGCACGCAAAAGGTCGGTGAGAAGGACGGATCAAGTGGTGGTAACCTCGAAGCTTGGGAGATTATG
ATGAAAGAAAAGCTGGGGAACATGAAGGAGATGCTAGGATTCTCCAAAGACGTGCTCTCATGGCTCGAAGACATGACCTC
ATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29744.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis