Browse Element(s) Details


OsAffx.17589.1.S1_at

Description tigr:9637.m00485
TID=OsAffx.17589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0728011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07250OsAffx.1647.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.20565.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.1412.2.S1_at1/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07260NANA9+3558989..3559863retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07270NANA9+3560254..3564646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07280OsAffx.17589.1.S1_at11/119+3576888..3579495hypothetical protein
LOC_Os09g07280Os.56124.1.S1_at7/119+3576888..3579495hypothetical protein
LOC_Os09g07280OsAffx.21595.1.S1_x_at1/119+3576888..3579495hypothetical protein
LOC_Os09g07290Os.54952.1.S1_at11/119+3580289..3585027GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17589.1.S1_at--594--791Chr09:3576923..3576947 (25 bp)
ATGTGGGCGCCATGAAGAGGTCTTC
LOC_Os09g07280
OsAffx.17589.1.S1_at--5--5371Chr09:3576936..3576960 (25 bp)
GAAGAGGTCTTCAGCGAGAGCATGA
LOC_Os09g07280
OsAffx.17589.1.S1_at--1006--2091Chr09:3576964..3576988 (25 bp)
ACATCGGTGGTAGCGTTGAGCCTGA
LOC_Os09g07280
OsAffx.17589.1.S1_at--561--9872Chr09:3577003..3577027 (25 bp)
TACTTAAGTCTATATTTCCTCCCAA
LOC_Os09g07280
OsAffx.17589.1.S1_at--457--2471Chr09:3577162..3577186 (25 bp)
AACAGCCGTCAACAGAGGTACGACT
LOC_Os09g07280
OsAffx.17589.1.S1_at--595--8592Chr09:3577192..3577216 (25 bp)
TGGTCTTCAACCAGCGGCGTAGAGA
LOC_Os09g07280
OsAffx.17589.1.S1_at--301--1631Chr09:3577204..3577228 (25 bp)
AGCGGCGTAGAGATTCACCCACTAC
LOC_Os09g07280
OsAffx.17589.1.S1_at--306--2031Chr09:3577224..3577248 (25 bp)
ACTACCTCTGCGATTTGTTGAGAAC
LOC_Os09g07280
OsAffx.17589.1.S1_at--64--2471Chr09:3577246..3577270 (25 bp)
AACAACTACACATCTGGTCTTTGCC
LOC_Os09g07280
OsAffx.17589.1.S1_at--783--7491Chr09:3577278..3577300 (23 bp)
GTGGTCGTCTCATTATCCCATGTAT
LOC_Os09g07280
OsAffx.17589.1.S1_at--814--6435Chr09:3578028..3578052 (25 bp)
GATCATCAACTCGTTCATTTGCATT
LOC_Os09g07280
Target Sequence 
ATGTGGGCGCCATGAAGAGGTCTTCAGCGAGAGCATGAATGACATCGGTGGTAGCGTTGAGCCTGAGAGTATTCTTCCTT
TACTTAAGTCTATATTTCCTCCCAACTTTGACGGTATTGGCGGCATAGAATTAGCATTTAACAGCCGTCAACAGAGGTAC
GACTACAACTGGTCTTCAACCAGCGGCGTAGAGATTCACCCACTACCTCTGCGATTTGTTGAGAACAACTACACATCTGG
TCTTTGCCCAGTGTGGTGGTCGTCTCATTATCCCATGTATTCGATCGAGATCATCAACTCGTTCATTTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis