Browse Element(s) Details


Os.56124.1.S1_at

Description gb:AK109296.1
DB_XREF= gi:32994505
TID=Os.56124.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-D05, full insert sequence.
FL= gb:AK109296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g072807/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07250OsAffx.1647.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.20565.1.S1_at2/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07250OsAffx.1412.2.S1_at1/119+3555766..3558573retrotransposon protein, putative, unclassified
LOC_Os09g07260NANA9+3558989..3559863retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07270NANA9+3560254..3564646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07280OsAffx.17589.1.S1_at11/119+3576888..3579495hypothetical protein
LOC_Os09g07280Os.56124.1.S1_at7/119+3576888..3579495hypothetical protein
LOC_Os09g07280OsAffx.21595.1.S1_x_at1/119+3576888..3579495hypothetical protein
LOC_Os09g07290Os.54952.1.S1_at11/119+3580289..3585027GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g07300OsAffx.29744.1.S1_x_at11/119+3585605..3606830auxin transport protein, putative, expressed
LOC_Os09g07300Os.5893.1.S1_at11/119+3585605..3606830auxin transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56124.1.S1_at--669--9391Chr09:3579080..3579104 (25 bp)
TCGTTGTGCCGTTGCTCGACTCACA
LOC_Os09g07280
Os.56124.1.S1_at--630--651Chr09:3579121..3579145 (25 bp)
ATGCACCGCATCATGCTCAATGCCA
LOC_Os09g07280
Os.56124.1.S1_at--1121--4251Chr09:3579195..3579219 (25 bp)
CCGGCGCTAGGCGAATCGCAATGAT
LOC_Os09g07280
Os.56124.1.S1_at--1038--3012Chr09:3579365..3579389 (25 bp)
AATGCGAAGGCTGGCGACGACCACA
LOC_Os09g07280
Os.56124.1.S1_at--22--5791Chr09:3579380..3579404 (25 bp)
GACGACCACATCTTTTGTGGATCTT
LOC_Os09g07280
Os.56124.1.S1_at--848--8352Chr09:3579433..3579457 (25 bp)
GGCGGCAATGGTGTGACCACGACAT
LOC_Os09g07280
Os.56124.1.S1_at--452--9731Chr09:3579457..3579481 (25 bp)
TCAAGTGGTCCAACACTGTTCATCT
LOC_Os09g07280
Os.56124.1.S1_at--1034--9991Chr09:3579493..3579517 (25 bp)
TAGCTGCCATCGGTCTAGTGCTGGG
NONE
Os.56124.1.S1_at--596--2891Chr09:3579537..3579561 (25 bp)
AAGGTGGATCCTTTACTGATTTTAT
NONE
Os.56124.1.S1_at--865--10391Chr09:3579584..3579608 (25 bp)
TTTTGCCTTATGGTTGTATCGAACT
NONE
Os.56124.1.S1_at--802--7171Chr09:3579615..3579639 (25 bp)
GTCTGATTTTGGTAAGTGCTTCCAT
NONE
Target Sequence 
TCGTTGTGCCGTTGCTCGACTCACACGCGCCGCTCGGCCGCATGCACCGCATCATGCTCAATGCCACGACCACATCACGC
CAGCCACCCACTGTGCATCTCGCCTTATCCCCGCGCCGGCGCTAGGCGAATCGCAATGATGACGGCAAGGAGGACGAGAA
GGCGGCAGCAATGTCCATGGTGATAGTGGATCTGGTAGAGTGGCCATGGCGACGGTGGATCTGGAGGAGGACGCAGCTAG
CAAGACAGAGGCTGGCGATGGGTGGATTGGTGGAGGGCACCAAGCAATGCGAAGGCTGGCGACGACCACATCTTTTGTGG
ATCTTGTTGTAGGTGGCGGCAGAGGAAGGCGCAGGCGGCAATGGTGTGACCACGACATCAAGTGGTCCAACACTGTTCAT
CTTTAATTGGGGCTAGCTGCCATCGGTCTAGTGCTGGGCTTGAAGGAGATCAAGTTTAAGGTGGATCCTTTACTGATTTT
ATTTGGGTGAAATCTGGTTCTTGTTTTTGCCTTATGGTTGTATCGAACTATCAAAGTCTGATTTTGGTAAGTGCTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis