Browse Element(s) Details

Os.54966.1.S1_at

Description

gb:AK107208.1
DB_XREF= gi:32992417
TID=Os.54966.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B11, full insert sequence.
FL= gb:AK107208.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47620	11/11	IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g11000	2/11	transposon protein, putative, unclassified
LOC_Os11g44619	1/11

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47580	Os.52582.1.S1_at	11/11	6	+	28805783..28815146	ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590	OsAffx.5138.1.S1_at	11/11	6	+	28817164..28818182	AP2 domain containing protein, expressed
LOC_Os06g47600	Os.6291.1.S1_x_at	11/11	6	+	28824832..28826005	Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600	Os.6291.1.S1_at	11/11	6	+	28824832..28826005	Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47610	NA	NA	6	+	28829642..28830505	transposon protein, putative, unclassified
LOC_Os06g47620	Os.54966.1.S1_at	11/11	6	+	28830650..28836130	IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620	OsAffx.19893.1.S1_at	1/11	6	+	28830650..28836130	IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47630	NA	NA	6	+	28845114..28845938	hypothetical protein
LOC_Os06g47640	Os.53014.1.S1_at	11/11	6	+	28846315..28847024	EF hand family protein, expressed
LOC_Os06g47660	Os.11189.2.S1_at	11/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	OsAffx.28159.1.S1_at	10/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	Os.52494.1.S1_at	1/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47650	Os.11189.1.S1_at	11/11	6	+	28852113..28855938	Leucine Rich Repeat family protein, expressed
LOC_Os06g47670	OsAffx.28160.1.S1_x_at	4/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47670	OsAffx.28160.1.S1_at	3/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47680	OsAffx.10373.1.S1_x_at	11/11	6	+	28858090..28859394	F-box domain containing protein
LOC_Os06g47680	OsAffx.10373.1.S1_at	11/11	6	+	28858090..28859394	F-box domain containing protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0009850	biological_process	auxin metabolism
GO:0008237	molecular_function	metallopeptidase activity
GO:0010178	molecular_function	IAA-amino acid conjugate hydrolase activity
GO:0010179	molecular_function	IAA-Ala conjugate hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54966.1.S1_at--1149--417	1	Chr06:28831206..28831230 (25 bp)	CCCTACTTCATGATCGACGAGGACG	LOC_Os06g47620
Os.54966.1.S1_at--205--929	1	Chr06:28831095..28831119 (25 bp)	TCCGACGACCCGGATGTCGAGCTGG	LOC_Os06g47620
Os.54966.1.S1_at--517--107	1	Chr06:28831052..28831076 (25 bp)	AGGGAGCCCGGCAAAGTCAGTCGAT	LOC_Os06g47620
Os.54966.1.S1_at--427--395	1	Chr06:28831044..28831068 (25 bp)	CGGCAAAGTCAGTCGATCAGCGCGC	LOC_Os06g47620
Os.54966.1.S1_at--275--391	1	Chr06:28830977..28831001 (25 bp)	CTGGACTGGTGATTTTGGGCCCATT	LOC_Os06g47620
Os.54966.1.S1_at--857--25	1	Chr06:28830928..28830952 (25 bp)	ATAGGGATCGGTGTTTTTGCCCTGC	LOC_Os06g47620
Os.54966.1.S1_at--1091--1039	2	Chr06:28830854..28830878 (25 bp)	TTACTCCCTTAAATGTATACCGAAT	LOC_Os06g47620
Os.54966.1.S1_at--973--977	43	Chr12:26414650..26414673 (24 bp)	TACCGAATCTAATTCGTACCCCTCA	NONE
Os.54966.1.S1_at--1018--185	1	Chr06:28830774..28830798 (25 bp)	AACTGGTACAAATAGACTCCCTCGG	LOC_Os06g47620
Os.54966.1.S1_at--988--983	5	Chr06:25987594..25987618 (25 bp)	TACAAATAGACTCCCTCGGCGGTTT	NONE
Os.54966.1.S1_at--721--681	15	Chr11:13216716..13216735 (20 bp)	GTTTCAAGGGCGGTTTTGCTGACGT	NONE

Target Sequence

CCCTACTTCATGATCGACGAGGACGTCCTCCCCACCGGCGCCGCCTTCCACGCCGCCATCGCCGAGCGCTACCTCGCCAA
CCACTCGCCTTCCTCCTCCTCCTCCTCCGACTCCGACGACCCGGATGTCGAGCTGGAGGCGTCGTGACCGAGCAAGGGAG
CCCGGCAAAGTCAGTCGATCAGCGCGCCGCGCCGCGCCGCGGGAGCGCGCCACGCCGGTTGGTGGTGGGCTGGACTGGTG
ATTTTGGGCCCATTTCGCGGTGGGCTTTGTCGCGGGCCATAGGGATCGGTGTTTTTGCCCTGCCATGGGGAAATTTAGGT
GGGAGGGATTAATCTGAGGAAAAAGTCCACTTTTACTCCCTTAAATGTATACCGAATCTAATTCGTACCCCTCAACCAGA
AAACCGGTTAGGATGACTCCCCCAATTACTAAAACTGGTACAAATAGACTCCCTCGGCGGTTTCAAGGGCGGTTTTGCTG
ACGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis