Browse Element(s) Details


Os.5505.1.S1_at

Description gb:AB029510.1
DB_XREF= gi:5902929
GEN=OsRac3
TID=Os.5505.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5505 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for small GTP-binding protein OsRac3, complete cds.
PROD=small GTP-binding protein OsRac3
FL= gb:AK069345.1 gb:AK059970.1 gb:AB029510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5086010/11RAC-like GTP binding protein ARAC10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50890OsAffx.12581.1.S1_at11/112+31100358..31101563hypothetical protein
LOC_Os02g50900OsAffx.3031.1.S1_at11/112+31105977..31108488expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009734biological_processauxin mediated signaling pathway
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0030833biological_processregulation of actin filament polymerization
GO:0030834biological_processregulation of actin filament depolymerization
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5505.1.S1_at--506--7971Chr02:31080212..31080235 (24 bp)
GGATCTCCGTGAAGACAAGCACTAC
LOC_Os02g50860
Os.5505.1.S1_at--368--2711Chr02:31080196..31080220 (25 bp)
AAGCACTACTTGTTGGACCATCCTG
LOC_Os02g50860
Os.5505.1.S1_at--456--5851Chr02:31080181..31080205 (25 bp)
GACCATCCTGGCATGATACCTGTTA
LOC_Os02g50860
Os.5505.1.S1_at--45--291Chr02:31079955..31079979 (25 bp)
ATAGGTGCTGCTTATTACATTGAGT
LOC_Os02g50860
Os.5505.1.S1_at--281--631NONE
ATGCTCTATGATGAACATGTTCCGT
NONE
Os.5505.1.S1_at--824--5511Chr02:31078955..31078979 (25 bp)
GAAAATGTCATGCTTCAAATCCTGA
LOC_Os02g50860
Os.5505.1.S1_at--1149--551Chr02:31078937..31078961 (25 bp)
ATCCTGATTGATCGAGATGTCCCTT
LOC_Os02g50860
Os.5505.1.S1_at--687--6031Chr02:31078924..31078948 (25 bp)
GAGATGTCCCTTACATGATGCAATG
LOC_Os02g50860
Os.5505.1.S1_at--497--5151Chr02:31078891..31078915 (25 bp)
GCAACCTCAAGCTGGCAACCTTTGG
LOC_Os02g50860
Os.5505.1.S1_at--319--3251Chr02:31078876..31078900 (25 bp)
CAACCTTTGGAGTCTGAATGTGCTG
LOC_Os02g50860
Os.5505.1.S1_at--430--1151Chr02:31078776..31078800 (25 bp)
AGTCTGCTTATGTACCGCACAATGC
LOC_Os02g50860
Target Sequence 
GGATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTGTTACCACAGCACAGGGTGAAGAACTTC
GAAAACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGAATGTCAAAGGTGTGTTTGATGCTGCT
ATCAAGGTAGTAATCCAGCCTCCAACTAAGCAGAGGGAAAAGAAGAAAAAGAAATCNCGACAAGGATGCTCTATGATGAA
CATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAGATGTCCCTTACATGATGCAATGTTNTGGGTG
CAACCTCAAGCTGGCAACCTTTGGAGTCTGAATGTGCTGGTAGAGTTAGATGCAAAGTTCTTGTGTATATTTGCATCTTT
TGGTAATTAATTACTAGAGTTAGATGGTTAAACTAGTCTGCTTATGTACCGCACAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis