Browse Element(s) Details


Os.55065.1.S1_at

Description gb:AK107405.1
DB_XREF= gi:32992614
TID=Os.55065.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-E03, full insert sequence.
FL= gb:AK107405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0454011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed
LOC_Os06g04540Os.55065.1.S1_at11/116+1961307..1962581DNA-binding protein, putative, expressed
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04570OsAffx.27455.1.S1_at11/116+1986292..1987387hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55065.1.S1_at--273--6571Chr06:1961610..1961634 (25 bp)
GATTCTTCAAGACCATCTGCCACAC
LOC_Os06g04540
Os.55065.1.S1_at--529--471Chr06:1961596..1961620 (25 bp)
ATCTGCCACACAACCTGATGAACGG
LOC_Os06g04540
Os.55065.1.S1_at--510--3231Chr06:1961586..1961610 (25 bp)
CAACCTGATGAACGGAATCCACCTC
LOC_Os06g04540
Os.55065.1.S1_at--161--4711Chr06:1961510..1961534 (25 bp)
GCGGCGCCGTACTGATCAACATCGA
LOC_Os06g04540
Os.55065.1.S1_at--1040--9571Chr06:1961399..1961423 (25 bp)
TCTTCCGCCTTTGCTAATCATGATG
LOC_Os06g04540
Os.55065.1.S1_at--253--3071Chr06:1961384..1961408 (25 bp)
AATCATGATGCTCTCGTGTTGTTTA
LOC_Os06g04540
Os.55065.1.S1_at--904--8851Chr06:1961379..1961403 (25 bp)
TGATGCTCTCGTGTTGTTTAATCTG
LOC_Os06g04540
Os.55065.1.S1_at--753--8771Chr06:1961365..1961389 (25 bp)
TGTTTAATCTGTGGCAATCTGCTTA
LOC_Os06g04540
Os.55065.1.S1_at--704--3051Chr06:1961350..1961374 (25 bp)
AATCTGCTTAATTGCAAGCTCATCA
LOC_Os06g04540
Os.55065.1.S1_at--485--5171Chr06:1961337..1961361 (25 bp)
GCAAGCTCATCACTGCAATTAAGCA
LOC_Os06g04540
Os.55065.1.S1_at--571--2711Chr06:1961317..1961341 (25 bp)
AAGCAGCAGCTAAGGATGGTTGGAT
LOC_Os06g04540
Target Sequence 
GATTCTTCAAGACCATCTGCCACACAACCTGATGAACGGAATCCACCTCCCCGGCGACGCCGCCTACGGCTGGACCAGCG
GCGGCGGCGGCGGCGGCCGCGCGGCGCCGTACTGATCAACATCGATCTCGCCGGAGAGAAAAAAAATGGAGGAGAAGGAT
CGGAGCGAGCCGTGCATGGTGTAGGATGAATTAAGCTAAGAGTTAATTTCTTCTTCCGCCTTTGCTAATCATGATGCTCT
CGTGTTGTTTAATCTGTGGCAATCTGCTTAATTGCAAGCTCATCACTGCAATTAAGCAGCAGCTAAGGATGGTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis