Browse Element(s) Details


Os.5511.1.S1_s_at

Description gb:CF319324
DB_XREF= gi:33691085
DB_XREF=HD--09-M15.g1
CLONE=HD--09-M15
TID=Os.5511.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.5511 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177122.1 (A.thaliana) acid phosphatase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1225011/11Protein SUR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12230Os.49501.1.A1_at11/116+6570019..6571670TCP family transcription factor containing protein, expressed
LOC_Os06g12240OsAffx.15381.1.S1_at9/116+6583406..6584966hypothetical protein
LOC_Os06g12250Os.5511.1.S1_s_at11/116+6588824..6590792Protein SUR2, putative, expressed
LOC_Os06g12260Os.17863.1.S1_at11/116+6594965..6601477expressed protein
LOC_Os06g12270OsAffx.15382.1.S1_at10/116+6602976..6603636hypothetical protein
LOC_Os06g12280OsAffx.15383.1.S1_at11/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12280Os.11704.1.S1_at1/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12290OsAffx.15384.1.S1_at11/116+6611662..6612441Glutathione S-transferase, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5511.1.S1_s_at--770--9251Chr06:6589301..6589325 (25 bp)
TCCTAAGACGGCCATATTCTTCTTC
LOC_Os06g12250
Os.5511.1.S1_s_at--514--231Chr06:6589288..6589312 (25 bp)
ATATTCTTCTTCTCGTTTGCGACCA
LOC_Os06g12250
Os.5511.1.S1_s_at--834--751Chr06:6589212..6589236 (25 bp)
ATGTCTTCTTCAGCAACAACAGCGC
LOC_Os06g12250
Os.5511.1.S1_s_at--995--1711Chr06:6589173..6589197 (25 bp)
ACCACCAGCTCTATGGCAACAAGTA
LOC_Os06g12250
Os.5511.1.S1_s_at--159--2811Chr06:6589114..6589138 (25 bp)
AAGATCCTCGGAACATACATGCCTT
LOC_Os06g12250
Os.5511.1.S1_s_at--101--9871Chr06:6589099..6589123 (25 bp)
TACATGCCTTACACTCTTGAGAACC
LOC_Os06g12250
Os.5511.1.S1_s_at--310--4571Chr06:6589054..6589078 (25 bp)
GCGCGCCCGATTAAGCTCAATGTGG
LOC_Os06g12250
Os.5511.1.S1_s_at--109--5831Chr06:6589016..6589040 (25 bp)
GACCGATTAAGCTCAATCTAGCAGA
LOC_Os06g12250
Os.5511.1.S1_s_at--960--131Chr06:6588977..6589001 (25 bp)
ATTAAGCAGTGTTCTTCCTGCCAGT
LOC_Os06g12250
Os.5511.1.S1_s_at--14--3831Chr06:6588960..6588984 (25 bp)
CTGCCAGTGCACAAAGCTCATGTCA
LOC_Os06g12250
Os.5511.1.S1_s_at--305--9631Chr06:6588943..6588967 (25 bp)
TCATGTCATGTTGTAGTATTGCCTG
LOC_Os06g12250
Target Sequence 
TCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAAGACCNTCGATGACCACTGCGGCNTGTGGCTCCCGGGCA
ACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTC
TCGCAGNCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGG
ATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAG
GCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5511.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis