Browse Element(s) Details


Os.55122.1.S1_at

Description gb:AK107526.1
DB_XREF= gi:32992735
TID=Os.55122.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G04, full insert sequence.
FL= gb:AK107526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4187010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41830Os.46785.2.S1_x_at5/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.4592.1.S1_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.442.1.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.30226.2.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41840OsAffx.4592.1.S1_at11/115+24421248..24421871hypothetical protein
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41860NANA5+24429352..24432212retrotransposon protein, putative, unclassified
LOC_Os05g41870Os.55122.1.S1_at10/115+24435620..24436534expressed protein
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55122.1.S1_at--1136--3771Chr05:24435846..24435870 (25 bp)
CTCGTGTAGGATGCTGCTGCGTGAC
LOC_Os05g41870
Os.55122.1.S1_at--570--7151Chr05:24435800..24435824 (25 bp)
GTCTCGCCGATGCAGAATCATCAAT
LOC_Os05g41870
Os.55122.1.S1_at--244--3091Chr05:24435778..24435802 (25 bp)
AATAATTGTGGTGTGATCGCCGTAT
LOC_Os05g41870
Os.55122.1.S1_at--737--6371Chr05:24435764..24435788 (25 bp)
GATCGCCGTATTTAGGTTTGCCATG
LOC_Os05g41870
Os.55122.1.S1_at--424--10091Chr05:24435752..24435776 (25 bp)
TAGGTTTGCCATGCACACGGGCAGT
LOC_Os05g41870
Os.55122.1.S1_at--962--2171Chr05:24435738..24435762 (25 bp)
ACACGGGCAGTGTACCGACGTGCAT
LOC_Os05g41870
Os.55122.1.S1_at--698--7331Chr05:24435719..24435743 (25 bp)
GTGCATCGGTGCATGTAGTGGTTTT
LOC_Os05g41870
Os.55122.1.S1_at--566--3131NONE
AATTTTCGTCTGGTCTGGATGTGGC
NONE
Os.55122.1.S1_at--927--8651Chr05:24435675..24435699 (25 bp)
TGTGGCTGGGTAGGTCATATCGTTA
LOC_Os05g41870
Os.55122.1.S1_at--561--4011Chr05:24435647..24435671 (25 bp)
CGTCGATGTGGTTCGGTAGGTCATA
LOC_Os05g41870
Os.55122.1.S1_at--285--231Chr05:24435621..24435645 (25 bp)
ATATATTGTTAGTGCGTCGTTGTGT
LOC_Os05g41870
Target Sequence 
CTCGTGTAGGATGCTGCTGCGTGACTCGGGCGGTAGCTGCGACGCCGTCTCGCCGATGCAGAATCATCAATAATTGTGGT
GTGATCGCCGTATTTAGGTTTGCCATGCACACGGGCAGTGTACCGACGTGCATCGGTGCATGTAGTGGTTTTAATTTTCG
TCTGGTCTGGATGTGGCTGGGTAGGTCATATCGTTAGTGCGTCGATGTGGTTCGGTAGGTCATATATATATTGTTAGTGC
GTCGTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis