Browse Element(s) Details


Os.55141.1.S1_at

Description gb:AK107568.1
DB_XREF= gi:32992777
TID=Os.55141.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C11, full insert sequence.
FL= gb:AK107568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4790011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47850OsAffx.4648.1.S1_at11/115+27357615..27362616CRS1/YhbY domain containing protein, expressed
LOC_Os05g47860OsAffx.27361.1.S1_at11/115+27363830..27364111hypothetical protein
LOC_Os05g47870Os.54069.1.S1_at10/115+27366036..27371699expressed protein
LOC_Os05g47870Os.50619.1.S1_x_at1/115+27366036..27371699expressed protein
LOC_Os05g47880Os.5255.1.S1_at11/115+27374195..27375476Galactosyltransferase family protein, expressed
LOC_Os05g47890Os.8991.1.S1_at11/115+27376091..27378590Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os05g47900Os.55141.1.S1_at11/115+27379989..27382026Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47910NANA5+27382768..27383739retrotransposon protein, putative, unclassified
LOC_Os05g47920Os.46785.2.S1_x_at2/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.30226.2.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.442.1.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47930Os.12118.1.A1_a_at11/115+27390831..27395793thiol oxidoreductase, putative, expressed
LOC_Os05g47940OsAffx.4649.1.S1_x_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47940OsAffx.4649.1.S1_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47950Os.55729.1.S1_at11/115+27402540..27404322UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55141.1.S1_at--244--7231Chr05:27381147..27381251 (25 bp)
GTCGCATAGTTGCTCTAACTCTGAT
LOC_Os05g47900
Os.55141.1.S1_at--233--2551Chr05:27381247..27381267 (21 bp)
AACTCTGATGGTACTCTTGCTACTC
LOC_Os05g47900
Os.55141.1.S1_at--1084--10371Chr05:27381284..27381308 (25 bp)
TTTTCCTCGGTGATCACGATGCTTA
LOC_Os05g47900
Os.55141.1.S1_at--616--1851Chr05:27381299..27381323 (25 bp)
ACGATGCTTACACCGTCGCAATGAT
LOC_Os05g47900
Os.55141.1.S1_at--387--5191Chr05:27381316..27381437 (25 bp)
GCAATGATCACTCTGCTGATGCTTA
LOC_Os05g47900
Os.55141.1.S1_at--516--3931Chr05:27381441..27381465 (25 bp)
CGGCTGGAATCGTTATACCTGTGTA
LOC_Os05g47900
Os.55141.1.S1_at--273--9971Chr05:27381456..27381480 (25 bp)
TACCTGTGTACATCATCTTGCTGTC
LOC_Os05g47900
Os.55141.1.S1_at--665--10711Chr05:27381473..27381497 (25 bp)
TTGCTGTCCTTAACTGAACTGCTTC
LOC_Os05g47900
Os.55141.1.S1_at--372--9111Chr05:27381650..27381674 (25 bp)
TGCTGCTGCGGTGAACATCAACCAG
LOC_Os05g47900
Os.55141.1.S1_at--935--5631Chr05:27381697..27381721 (25 bp)
GACAGCATGTCATCAGCATCCAATA
LOC_Os05g47900
Os.55141.1.S1_at--1015--4691Chr05:27381887..27381911 (25 bp)
GCGGCCACTCGCTTCTTAAGTAAAT
LOC_Os05g47900
Target Sequence 
GTCGCATAGTTGCTCTAACTCTGATGGTACTCTTGCTACTCCACGACGCAATCTCGGTTTTCCTCGGTGATCACGATGCT
TACACCGTCGCAATGATCACTCTGCTGATGCTTAGAACGGCTGGAATCGTTATACCTGTGTACATCATCTTGCTGTCCTT
AACTGAACTGCTTCATCGACGCAACCAGCGGCAGATTTCAGACGCTGCTGCTGCGGTGAACATCAACCAGCAGGCGCCAC
AGTCACCGCGGCGACAGCATGTCATCAGCATCCAATAAGTTCAGAGATGGAACATGTGTACGTGTATATACAAAGGCATG
TCACTTGGATGAGGTTTTGGGCTCAAGATGTGCGATCAAGATACGAAGATATGCAAGACATTGGTGTGATGTGTGAGTAG
TTGCTCTTTGTAAATATTGTGAAAAAAAAAGTGCATGCGTAAGCGGCCACTCGCTTCTTAAGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis