Browse Element(s) Details


Os.5522.1.S1_at

Description gb:D85239.1
DB_XREF= gi:1805501
TID=Os.5522.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5522 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for plastidic copperzinc-superoxide dismutase, complete cds.
PROD=superoxide dismutase precusor
FL= gb:AK104013.1 gb:AK059841.1 gb:D85239.1 gb:AK104240.1 gb:AK068627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4477010/11Superoxide dismutase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44730OsAffx.17514.1.S1_at11/118+27978031..27978466hypothetical protein
LOC_Os08g44740OsAffx.17515.1.S1_at11/118+27979966..27980923hypothetical protein
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006878biological_processcopper ion homeostasis
GO:0006979biological_processresponse to oxidative stress
GO:0009416biological_processresponse to light stimulus
GO:0019430biological_processremoval of superoxide radicals
GO:0046688biological_processresponse to copper ion
GO:0005737cellular_componentcytoplasm
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004785molecular_functioncopper, zinc superoxide dismutase activity
GO:0016532molecular_functionsuperoxide dismutase copper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5522.1.S1_at--1012--1751Chr08:28000559..28000578 (20 bp)
ACCTCCACGAGTTTGGCGATACTAC
LOC_Os08g44770
Os.5522.1.S1_at--310--672Chr08:28001378..28001402 (25 bp)
ATGAAGTCCGTCATGCGGGTGACCT
LOC_Os08g44770
Os.5522.1.S1_at--399--6011Chr08:28001705..28001729 (25 bp)
GAGAGCATTCGTTGTTCATGAGCTT
LOC_Os08g44770
Os.5522.1.S1_at--739--5291Chr08:28001828..28001848 (21 bp)
GAAGGGTGGCCATGAGCTTAGTCTC
LOC_Os08g44770
Os.5522.1.S1_at--707--1791Chr08:28002329..28002353 (25 bp)
ACCCCGTTGTAGGTCGCTGCAAGTT
LOC_Os08g44770
Os.5522.1.S1_at--1--1111NONE
AGTGTCAAGTATCGCATCCATGTCA
NONE
Os.5522.1.S1_at--162--6211Chr08:28002409..28002433 (25 bp)
GAGGCAGTCGTTCTTGTATCACATG
LOC_Os08g44770
Os.5522.1.S1_at--1058--1191Chr08:28002458..28002482 (25 bp)
AGTATCTGTTGATCGTTCGTCTCAC
LOC_Os08g44770
Os.5522.1.S1_at--1105--2251Chr08:28002504..28002528 (25 bp)
AAATAAGTGTCGTCACATCCCCTGT
LOC_Os08g44770
Os.5522.1.S1_at--152--6691Chr08:28002527..28002551 (25 bp)
GTTCTCCACCCTGTCAAACTATAAA
LOC_Os08g44770
Os.5522.1.S1_at--901--5891Chr08:28002563..28002587 (25 bp)
GAGCTGTTCTGGGTATACAACGCAT
LOC_Os08g44770
Target Sequence 
ACCTCCACGAGTTTGGCGATACTACGAATGGGTGCATATCAACAGGACCACATTTTAACCCAAACAATTTGACGCACGGT
GCACCAGAAGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAATGCTGAAGGTGTAGCTGAGGCAACCAT
TGTTGATAAGCAGATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATT
TGGGGAAGGGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCATGCGGTGTTGTTGGGCTGACC
CCGTTGTAGGTCGCTGCAAGTTGCAGCTGAAGTGTCAAGTATCGCATCCATGTCACCCTTTTTGTCATCNTCGAGCCTGA
GGCAGTCGTTCTTGTATCACATGGATTTCGCAACATGGATGCTTAATAGTATCTGTTGATCGTTCGTCTCACAGTAATAA
AATTTAGTTGAGCAAATAAGTGTCGTCACATCCCCTGTTCTCCACCCTGTCAAACTATAAATTGTGAAACATGAGCTGTT
CTGGGTATACAACGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis