Browse Element(s) Details


Os.55226.1.S1_at

Description gb:AK107693.1
DB_XREF= gi:32992902
TID=Os.55226.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C02, full insert sequence.
FL= gb:AK107693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4631011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46270Os.46314.3.S1_at2/113+26124655..26128916transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46280OsAffx.23366.2.S1_s_at1/113+26130797..26134394transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46290OsAffx.25576.1.S1_at10/113+26139600..26141135hypothetical protein
LOC_Os03g46300OsAffx.13380.1.S1_at11/113+26144227..26145082hypothetical protein
LOC_Os03g46310Os.55226.1.S1_at11/113+26147609..26150637expressed protein
LOC_Os03g46320OsAffx.13381.1.S1_at11/113+26152060..26154556hypothetical protein
LOC_Os03g46330Os.19756.1.S1_at11/113+26156406..26161820Pattern formation protein EMB30, putative, expressed
LOC_Os03g46340Os.12041.1.S1_at11/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.1.S1_x_at4/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.2.S1_x_at1/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46350OsAffx.3530.1.S1_at11/113+26171073..26172202hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55226.1.S1_at--98--4671Chr03:26148814..26148838 (25 bp)
GCGTGTCAAAGATCCCTTGTTCAAG
LOC_Os03g46310
Os.55226.1.S1_at--428--9311Chr03:26148851..26148875 (25 bp)
TCCCGATTAGCTCGTTTTGCAGTTG
LOC_Os03g46310
Os.55226.1.S1_at--449--2351Chr03:26149457..26149481 (25 bp)
AAAGCTCTTCATGCACTTTCGAAGT
LOC_Os03g46310
Os.55226.1.S1_at--6--4651Chr03:26150277..26150301 (25 bp)
GCGGGCGCCTACGTAATAGTCAGTT
LOC_Os03g46310
Os.55226.1.S1_at--943--5991Chr03:26150334..26150358 (25 bp)
GAGACCTACAAGACTAGCCTCCTGA
LOC_Os03g46310
Os.55226.1.S1_at--928--7491Chr03:26150401..26150425 (25 bp)
GTGGTGAATCGATCTACATGTTTGT
LOC_Os03g46310
Os.55226.1.S1_at--192--5771Chr03:26150435..26150459 (25 bp)
GACGTATCCGAGCATTCTTTGTTGA
LOC_Os03g46310
Os.55226.1.S1_at--381--10551Chr03:26150449..26150473 (25 bp)
TTCTTTGTTGATCAGACCTTCGGTC
LOC_Os03g46310
Os.55226.1.S1_at--1106--1731Chr03:26150464..26150488 (25 bp)
ACCTTCGGTCTTGTTGCTGGAATCA
LOC_Os03g46310
Os.55226.1.S1_at--1157--10251Chr03:26150501..26150525 (25 bp)
TTTGTTCTGAACAGGCAGCACCTTT
LOC_Os03g46310
Os.55226.1.S1_at--877--7431Chr03:26150610..26150634 (25 bp)
GTGTAGGCACTGTATGCTTCCATAA
LOC_Os03g46310
Target Sequence 
GCGTGTCAAAGATCCCTTGTTCAAGCGAATGGGAGCTTCCCGATTAGCTCGTTTTGCAGTTGATGATGCAAGGAGAATGA
AGGTAGTGGAGATGGGGGGAGCTNAAGAACTTCTTAATGTATTGGAAGGTGCTAAAGATGATAAAACACGTAAACAAATC
CTAAAAGCTCTTCATGCACTTTCGAAGTCTGAGGAAGCAGCAGGGTTTTTGGACAAGGCGGGCGCCTACGTAATAGTCAG
TTCCACTCCCAACTCCCTCGAGTATGCTGAGATCGAGACCTACAAGACTAGCCTCCTGAAGGCGTTTGATGAACTGAAGT
CGTGACGATAAATGGCTGGGAGTGGTGAATCGATCTACATGTTTGTTTTAAACTGGACGTATCCGAGCATTCTTTGTTGA
TCAGACCTTCGGTCTTGTTGCTGGAATCATGTCTACATACATTTGTTCTGAACAGGCAGCACCTTTAGAGAGTTGTTATT
TTGTCTAAACGAATCTTCTTCCTTTTTTCTAGAGGAAAAACATTGGATTGGCTTTATCTGTATAATGATCGTGTAGGCAC
TGTATGCTTCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis