Browse Element(s) Details


Os.55234.1.S1_s_at

Description gb:AK107705.1
DB_XREF= gi:32992914
TID=Os.55234.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D03, full insert sequence.
FL= gb:AK107705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g385902/11hypothetical protein
LOC_Os09g137401/11SET domain containing protein, expressed
LOC_Os07g155801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0031062biological_processpositive regulation of histone methylation
GO:0042800molecular_functionhistone lysine N-methyltransferase activity (H3-K4 specific)
GO:0046975molecular_functionhistone lysine N-methyltransferase activity (H3-K36 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55234.1.S1_s_at--377--6131Chr05:7677377..7677401 (25 bp)
GAGGTCAGGCGTAGGCGGCCCGGGC
NONE
Os.55234.1.S1_s_at--952--7371Chr04:22710609..22710633 (25 bp)
GGGCTCGGTAGTGGCAACGGTGATG
LOC_Os04g38590
Os.55234.1.S1_s_at--321--1831Chr04:22710658..22710682 (25 bp)
ACGCCGGCGACAGCGGTTCTCTGTA
LOC_Os04g38590
Os.55234.1.S1_s_at--145--4692Chr05:7677816..7677840 (25 bp)
GCGGTTCTCTGTATTTGTGATGCTT
NONE
Os.55234.1.S1_s_at--346--10593Chr05:7677820..7677844 (25 bp)
TTCTCTGTATTTGTGATGCTTGTAA
NONE
Os.55234.1.S1_s_at--1022--7392Chr05:7677832..7677856 (25 bp)
GTGATGCTTGTAATATTTGTGATGA
NONE
Os.55234.1.S1_s_at--853--6512Chr05:7677855..7677879 (25 bp)
GATATTTGTGAAGCATTGTATTTGG
NONE
Os.55234.1.S1_s_at--338--6894Chr05:7677872..7677896 (25 bp)
GTATTTGGATTGATGCTTGGTGTTC
NONE
Os.55234.1.S1_s_at--177--6333Chr05:7677883..7677907 (25 bp)
GATGCTTGGTGTTCAAATTTTTTGT
NONE
Os.55234.1.S1_s_at--530--791Chr04:22710765..22710789 (25 bp)
ATGTGTGGATATTTTTGATGCTTGA
NONE
Os.55234.1.S1_s_at--420--8571Chr04:22710770..22710794 (25 bp)
TGGATATTTTTGATGCTTGAATGCT
NONE
Target Sequence 
GAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCG
CGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGC
GGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTC
GGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCA
AGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTA
TTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55234.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis