Browse Element(s) Details


Os.55257.1.S1_at

Description gb:AK107744.1
DB_XREF= gi:32992953
TID=Os.55257.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H02, full insert sequence.
FL= gb:AK107744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1133011/11Rapid ALkalinization Factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11300OsAffx.26829.1.S1_at11/115+6359459..6360295hypothetical protein
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein
LOC_Os05g11320OsAffx.9949.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.2256.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.7992.3.S1_x_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11330Os.55257.1.S1_at11/115+6385067..6385803Rapid ALkalinization Factor family protein, expressed
LOC_Os05g11340OsAffx.26831.1.S1_at11/115+6388276..6389171hypothetical protein
LOC_Os05g11350OsAffx.26832.1.S1_at10/115+6394057..6395676expressed protein
LOC_Os05g11360OsAffx.14636.1.S1_at11/115+6395840..6396442rhamnose biosynthetic enzyme 1, putative
LOC_Os05g11370Os.52040.1.S1_at11/115+6398776..6402275expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0048046cellular_componentapoplast
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55257.1.S1_at--238--8171Chr05:6385451..6385475 (25 bp)
GGAAGCCGACGAACCGGTACGTCAG
LOC_Os05g11330
Os.55257.1.S1_at--549--5431Chr05:6385441..6385465 (25 bp)
GAACCGGTACGTCAGCTACTCGGCG
LOC_Os05g11330
Os.55257.1.S1_at--159--9311Chr05:6385302..6385326 (25 bp)
TCCCGCAACATGAACTGACGATGAT
LOC_Os05g11330
Os.55257.1.S1_at--757--7751Chr05:6385271..6385295 (25 bp)
GGTGATCACATCATTGTCCATCCAA
LOC_Os05g11330
Os.55257.1.S1_at--656--6451Chr05:6385268..6385292 (25 bp)
GATCACATCATTGTCCATCCAAATT
LOC_Os05g11330
Os.55257.1.S1_at--1154--91Chr05:6385231..6385255 (25 bp)
ATTCGTCCAATCCATTGATTCGGTC
LOC_Os05g11330
Os.55257.1.S1_at--553--3191Chr05:6385224..6385248 (25 bp)
CAATCCATTGATTCGGTCGGTGAAT
LOC_Os05g11330
Os.55257.1.S1_at--882--8791Chr05:6385216..6385240 (25 bp)
TGATTCGGTCGGTGAATGCATGGAT
LOC_Os05g11330
Os.55257.1.S1_at--347--651Chr05:6385201..6385225 (25 bp)
ATGCATGGATGGATCGATTATATAT
LOC_Os05g11330
Os.55257.1.S1_at--937--7471Chr05:6385156..6385180 (25 bp)
GTGTGTGATGCATTATTATTATATA
LOC_Os05g11330
Os.55257.1.S1_at--90--6651Chr05:6385109..6385133 (25 bp)
GTTGTATTTATATGCATGCTGCTGA
LOC_Os05g11330
Target Sequence 
GGAAGCCGACGAACCGGTACGTCAGCTACTCGGCGCTGGACGCGAACAAGGTGCCGTGCAACAAGCGAGGCCAGACCTAC
TACCAGAACTGCGCGTCGCAGCAGGCGGCGAATCCCTACCGNCGCGGCTGCTCCGCCATTACCCGCTGNTCCCGCAACAT
GAACTGACGATGATGATGATGGTGATCACATCATTGTCCATCCAAATTCCCCAATTCCCAATTCGTCCAATCCATTGATT
CGGTCGGTGAATGCATGGATGGATCGATTATATATATATATATATATATATATGTGTGTGTGATGCATTATTATTATATA
TTGGCTAATTATTAATCGATTAGTTGTATTTATATGCATGCTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis