Browse Element(s) Details


Os.2256.1.S1_at

Description gb:AF009959.1
DB_XREF= gi:2305112
TID=Os.2256.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2256 (NCBI UniGene Cluster)
DEF=Oryza sativa metallothionein-like protein mRNA, complete cds.
PROD=metallothionein-like protein
FL= gb:AF009959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g113201/11Metallothionein-like protein type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11290OsAffx.30226.2.S1_x_at2/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.442.1.S1_x_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.30226.2.S1_s_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11300OsAffx.26829.1.S1_at11/115+6359459..6360295hypothetical protein
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein
LOC_Os05g11320OsAffx.9949.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.2256.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.7992.3.S1_x_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11330Os.55257.1.S1_at11/115+6385067..6385803Rapid ALkalinization Factor family protein, expressed
LOC_Os05g11340OsAffx.26831.1.S1_at11/115+6388276..6389171hypothetical protein
LOC_Os05g11350OsAffx.26832.1.S1_at10/115+6394057..6395676expressed protein
LOC_Os05g11360OsAffx.14636.1.S1_at11/115+6395840..6396442rhamnose biosynthetic enzyme 1, putative
LOC_Os05g11370Os.52040.1.S1_at11/115+6398776..6402275expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2256.1.S1_at--990--1771NONE
ACACCAAATTAATCGGGCTCAGTTC
NONE
Os.2256.1.S1_at--962--8311NONE
GGCTCAGTTCATCGCAAATCGATCA
NONE
Os.2256.1.S1_at--1051--6451Chr05:6373231..6373298 (25 bp)
GATCAATCGATCAACATGTCGGACA
LOC_Os05g11320
Os.2256.1.S1_at--770--4631NONE
GCGTCGTCCTAGTTGACGCCGAAAA
NONE
Os.2256.1.S1_at--1022--2411NONE
AAAACCACTTCCAAATGGCTGAGGA
NONE
Os.2256.1.S1_at--309--1111NONE
AGTGTGTCTTCCGTTATGCGCCCCT
NONE
Os.2256.1.S1_at--392--611NONE
ATGCGCCCCTGCGTGCATATATATG
NONE
Os.2256.1.S1_at--1115--231Chr06:1602238..1602498 (25 bp)
ATATATGCATATGCCTGCCTGCCTG
NONE
Os.2256.1.S1_at--942--3491NONE
CATGGGACTTGCTATAATGGGCGTT
NONE
Os.2256.1.S1_at--1131--2951NONE
AATGGGCGTTATAACCTGCACCTTT
NONE
Os.2256.1.S1_at--963--231NONE
ATATGAATGAACGTGTCCTGGGATG
NONE
Target Sequence 
ACACCAAATTAATCGGGCTCAGTTCATCGCAAATCGATCAATCGATCAACATGTCGGACAAGTGCGGCAACTGCGACTGC
GCTGACAAAAGCCAGTGCGTGAAGAAAGGAACCAGCTATGGCGTCGTCCTAGTTGACGCCGAAAAAACCACTTCCAAATG
GCTGAGGAGGTCGGCTACAAAGAAAACGACAGGCGGGTGCAAGTGCACCACCGGCTGCTCCTGCGCCGGGTGCAACTGCG
GCAAGTGATGAACAAAGCTATCCTCTGCAACCTGGCCCCACAATCCAGTGTGTCTTCCGTTATGCGCCCCTGCGTGCATA
TATATGCATATGCCTGCCTGCCTGCTAAATAATGTTTCGTGTGGGGTATGTGTGCCATGGGACTTGCTATAATGGGCGTT
ATAACCTGCACCTTTGGGTGTTTATATGAATGAACGTGTCCTGGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis