Browse Element(s) Details


OsAffx.26832.1.S1_at

Description tigr:9633.m00998
TID=OsAffx.26832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1135010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11320OsAffx.9949.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.2256.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.7992.3.S1_x_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11330Os.55257.1.S1_at11/115+6385067..6385803Rapid ALkalinization Factor family protein, expressed
LOC_Os05g11340OsAffx.26831.1.S1_at11/115+6388276..6389171hypothetical protein
LOC_Os05g11350OsAffx.26832.1.S1_at10/115+6394057..6395676expressed protein
LOC_Os05g11360OsAffx.14636.1.S1_at11/115+6395840..6396442rhamnose biosynthetic enzyme 1, putative
LOC_Os05g11370Os.52040.1.S1_at11/115+6398776..6402275expressed protein
LOC_Os05g11380OsAffx.4301.2.S1_at11/115+6413046..6413875SRF-type transcription factor family protein
LOC_Os05g11390NANA5+6417218..6417933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.11264.1.S1_s_at3/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.20408.1.S1_at1/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26832.1.S1_at--508--931Chr05:6394146..6394328 (25 bp)
AGGCAGACACGGTACCAGGAAACAT
LOC_Os05g11350
OsAffx.26832.1.S1_at--974--8151NONE
GGAAACATGATGAACGCGGATATAT
NONE
OsAffx.26832.1.S1_at--1055--3071Chr05:6395145..6395169 (25 bp)
AATCAAAGTTGGTCATGGCCGTGGT
LOC_Os05g11350
OsAffx.26832.1.S1_at--715--871Chr05:6395159..6395183 (25 bp)
ATGGCCGTGGTGTCGAAGCTTTGCT
LOC_Os05g11350
OsAffx.26832.1.S1_at--191--1571Chr05:6395175..6395199 (25 bp)
AGCTTTGCTGCGGTGTGAGTATCCT
LOC_Os05g11350
OsAffx.26832.1.S1_at--1052--1651Chr05:6395321..6395345 (25 bp)
AGCGCCTTGAGCTTCTAGTCGTCGA
LOC_Os05g11350
OsAffx.26832.1.S1_at--367--1151Chr05:6395337..6395361 (25 bp)
AGTCGTCGACGAAATACTTGTGGTC
LOC_Os05g11350
OsAffx.26832.1.S1_at--83--9871Chr05:6395351..6395375 (25 bp)
TACTTGTGGTCGTTGAACGGCCGGT
LOC_Os05g11350
OsAffx.26832.1.S1_at--1160--7691Chr05:6395402..6395426 (25 bp)
GGGTCGAGCCCGAACACGCCGCAGA
LOC_Os05g11350
OsAffx.26832.1.S1_at--343--7571Chr05:6395433..6395457 (25 bp)
GGGCGACGTCGATCACCCTCGGCTA
LOC_Os05g11350
OsAffx.26832.1.S1_at--1008--9931Chr05:6395500..6395524 (25 bp)
TACGTCGTCGCAGTAGAGGTAGCTC
LOC_Os05g11350
Target Sequence 
AGGCAGACACGGTACCAGGAAACATGATGAACGCGGATATATATATGATATGATCACTTCACTTGAAATCAAAGTTGGTC
ATGGCCGTGGTGTCGAAGCTTTGCTGCGGTGTGAGTATCCTGGGGTGCGGCAGCAGCGCGGCGGAGACGTCGACGTCGCC
CCACCACTCAGCGCCGTGCTCGACGTACCACTCCGCCGTCTTCTTGATCCCCTCCTCCCATGGCGTCCGCTCCGACCACC
CCAGCGCCTTGAGCTTCTAGTCGTCGACGAAATACTTGTGGTCGTTGAACGGCCGGTCGCTCACCGTCGCGACGGCCTCG
CCGGGGTCGAGCCCGAACACGCCGCAGACATGGCGGGCGACGTCGATCACCCTCGGCTACGCCGACCTCCCCCGGTGGAG
CACGACGTCGAACGCCTCGGCTACGTCGTCGCAGTAGAGGTAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis