Browse Element(s) Details


OsAffx.26831.1.S1_at

Description tigr:9633.m00997
TID=OsAffx.26831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1134011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein
LOC_Os05g11320OsAffx.9949.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.2256.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.7992.3.S1_x_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11330Os.55257.1.S1_at11/115+6385067..6385803Rapid ALkalinization Factor family protein, expressed
LOC_Os05g11340OsAffx.26831.1.S1_at11/115+6388276..6389171hypothetical protein
LOC_Os05g11350OsAffx.26832.1.S1_at10/115+6394057..6395676expressed protein
LOC_Os05g11360OsAffx.14636.1.S1_at11/115+6395840..6396442rhamnose biosynthetic enzyme 1, putative
LOC_Os05g11370Os.52040.1.S1_at11/115+6398776..6402275expressed protein
LOC_Os05g11380OsAffx.4301.2.S1_at11/115+6413046..6413875SRF-type transcription factor family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26831.1.S1_at--537--2611Chr05:6389054..6389078 (25 bp)
AACGCCACGGAGGACCAGCCGAGCT
LOC_Os05g11340
OsAffx.26831.1.S1_at--744--9311Chr05:6389008..6389032 (25 bp)
TCGCCGTGGACCTCAGCTTCCGGAA
LOC_Os05g11340
OsAffx.26831.1.S1_at--914--8511Chr05:6389002..6389026 (25 bp)
TGGACCTCAGCTTCCGGAACGCGCA
LOC_Os05g11340
OsAffx.26831.1.S1_at--28--5431Chr05:6388909..6388929 (21 bp)
GAACCCCAAGAACACAACCGTGCTG
LOC_Os05g11340
OsAffx.26831.1.S1_at--195--1931Chr05:6388377..6388728 (25 bp)
ACGGTGCACGTGAAGAAAGTCCAAT
LOC_Os05g11340
OsAffx.26831.1.S1_at--778--5571Chr05:6388363..6388387 (25 bp)
GAAAGTCCAATTTGATTCCCACAAT
LOC_Os05g11340
OsAffx.26831.1.S1_at--601--10791Chr05:6388352..6388376 (25 bp)
TTGATTCCCACAATATAGATTCGAT
LOC_Os05g11340
OsAffx.26831.1.S1_at--847--10031Chr05:6388337..6388361 (25 bp)
TAGATTCGATCAGATACGGCTCCCG
LOC_Os05g11340
OsAffx.26831.1.S1_at--669--9651Chr05:6388328..6388352 (25 bp)
TCAGATACGGCTCCCGCTCTTGCAT
LOC_Os05g11340
OsAffx.26831.1.S1_at--268--4811Chr05:6388313..6388337 (25 bp)
GCTCTTGCATCCCTGAAACCAAGTA
LOC_Os05g11340
OsAffx.26831.1.S1_at--957--4971Chr05:6388307..6388331 (25 bp)
GCATCCCTGAAACCAAGTATATCCA
LOC_Os05g11340
Target Sequence 
AACGCCACGGAGGACCAGCCGAGCTCCAGGCAGCTCGTCTACGACCTCGCCGTGGACCTCAGCTTCCGGAACGCGCACCG
CCGCCTCTCCATCCGCTACCTCGACACCAAGCTCGGCCCCGCCGACGACGCGCTCCCGCTCTTCCGCCAGAACCCCAAGA
ACACAACCGTGCTGCACCCGGCGTTCCGCGGCGTGGTGGCGGTGGATGGCGGCACGGCGGCGGAGCTGGAGCGCGAGGCC
GCGGAGGGGACGGTGCACGTGAAGAAAGTCCAATTTGATTCCCACAATATAGATTCGATCAGATACGGCTCCCGCTCTTG
CATCCCTGAAACCAAGTATATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis