Browse Element(s) Details


Os.55262.1.S1_at

Description gb:AK107753.1
DB_XREF= gi:32992962
TID=Os.55262.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H11, full insert sequence.
FL= gb:AK107753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0742011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07370Os.49936.2.A1_at3/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.52238.1.S1_at2/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.33601.3.S1_x_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370OsAffx.15708.1.S1_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07380NANA2+3811254..3817625retrotransposon protein, putative, unclassified
LOC_Os02g07390NANA2+3820396..3820992hypothetical protein
LOC_Os02g07400NANA2+3821687..3824174retrotransposon protein, putative, unclassified
LOC_Os02g07410Os.7295.1.S1_at10/112+3827833..3830155Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os02g07420Os.55262.1.S1_at11/112+3830522..3832332expressed protein
LOC_Os02g07420Os.55262.1.S1_x_at11/112+3830522..3832332expressed protein
LOC_Os02g07430Os.56165.1.S1_at11/112+3833127..3837132MADS-box protein ZMM17, putative, expressed
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55262.1.S1_at--1154--6171Chr02:3832028..3832052 (25 bp)
GAGGAGCAGCCGAGACGAACAAGCC
LOC_Os02g07420
Os.55262.1.S1_at--1023--5071Chr02:3832023..3832047 (25 bp)
GCAGCCGAGACGAACAAGCCGAGGA
LOC_Os02g07420
Os.55262.1.S1_at--20--7671Chr02:3831721..3831745 (25 bp)
GGGATTCAAAGGAGAAGCATTCCAA
LOC_Os02g07420
Os.55262.1.S1_at--325--2312Chr08:15769555..15769924 (25 bp)
AAAGGAGAAGCATTCCAAGGAGAAG
NONE
Os.55262.1.S1_at--1155--8051Chr02:3831690..3831714 (25 bp)
GGAGAAGAGCAAGCGAAAGCACAAG
LOC_Os02g07420
Os.55262.1.S1_at--129--1291Chr02:3830888..3830912 (25 bp)
AGATGACTATTTCGCAAAGAACAAT
LOC_Os02g07420
Os.55262.1.S1_at--1136--7491Chr02:3830721..3830745 (25 bp)
GTGGTCCACGGTCAGCACACAAGTG
LOC_Os02g07420
Os.55262.1.S1_at--301--7831Chr02:3830712..3830736 (25 bp)
GGTCAGCACACAAGTGGAACATCAA
LOC_Os02g07420
Os.55262.1.S1_at--296--8891Chr02:3830653..3830677 (25 bp)
TGAGGACATTGTTCTGTCAGGCTAA
LOC_Os02g07420
Os.55262.1.S1_at--556--8771Chr02:3830644..3830668 (25 bp)
TGTTCTGTCAGGCTAAGGGTAGTAT
LOC_Os02g07420
Os.55262.1.S1_at--1027--10191Chr02:3830579..3830603 (25 bp)
TATTAGTTCTGTATCACTGTTCACT
LOC_Os02g07420
Target Sequence 
GAGGAGCAGCCGAGACGAACAAGCCGAGGAGGAGGAGGAGGAGGAGAGGCGCANGAGGAAGAAGAAGAAGCATGGCGACA
GGGGCAAAGACAAAGAGAGGGATTCAAAGGAGAAGCATTCCAAGGAGAAGGAGAAGAGCAAGCGAAAGCACAAGGATGAT
GATTTCAAAGAAATATCCAAAGATGACTATTTCGCAAAGAACAATGAGTTCGCAACCTGGTTGAAGGAAGAAAAAGGCAA
ATTTTTCTCTGATCTTTCTTCGGAGTCTGCTCGTGATCTGTTCGAGAAGTTTGTGAAAACTTGGAACAAAGGAAAGCTTC
CATCCCAATATTATGAGGGGATCACTCGTGGTCCACGGTCAGCACACAAGTGGAACATCAAAGTGTGATGCAACCTGAGG
NCCTTCTGTATTTTGTTGAGGACATTGTTCTGTCAGGCTAAGGGTAGTATNTATCTTCATCGCCTAGGTTTTNGTATCTA
AATTCATATATATTAGTTCTGTATCACTGTTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis