Browse Element(s) Details


Os.55296.1.S1_at

Description gb:AK107820.1
DB_XREF= gi:32993029
TID=Os.55296.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F12, full insert sequence.
FL= gb:AK107820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g369741/1114-3-3-like protein B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36940Os.17177.1.S1_at11/112+22305964..22307266expressed protein
LOC_Os02g36940OsAffx.22650.2.S1_x_at1/112+22305964..22307266expressed protein
LOC_Os02g36950Os.8146.1.S1_at11/112+22314003..22315404expressed protein
LOC_Os02g36950OsAffx.22650.1.S1_x_at1/112+22314003..22315404expressed protein
LOC_Os02g36960Os.53399.1.S1_at10/112+22321453..22325936choline transporter, putative, expressed
LOC_Os02g36974Os.3440.1.S2_at11/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_x_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36974Os.55296.1.S1_at1/112+22327413..2233184314-3-3-like protein B, putative, expressed
LOC_Os02g36990Os.54283.1.S1_at11/112+22333669..22337631Dynein light chain type 1 family protein, expressed
LOC_Os02g37000Os.55640.1.S1_at11/112+22341197..22342316Mitochondrial prohibitin complex protein 1, putative, expressed
LOC_Os02g37010Os.18322.1.S1_at11/112+22344199..22346137flavin-containing monooxygenase family protein, putative, expressed
LOC_Os02g37020Os.17647.1.S1_at11/112+22349326..22356185expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55296.1.S1_at--862--10291Chr07:6374544..6374568 (25 bp)
TTTCTTTTCTCTACCAAATTACTCG
NONE
Os.55296.1.S1_at--344--10551Chr07:6374543..6374567 (25 bp)
TTCTTTTCTCTACCAAATTACTCGA
NONE
Os.55296.1.S1_at--1056--9553Chr02:22327506..22327531 (23 bp)
TCTTTTCTCTACCAAATTACTCGAG
LOC_Os02g36974
Os.55296.1.S1_at--480--10491Chr07:6374482..6374506 (25 bp)
TTCTTCCTTTCCTCTACCAAAGGAT
NONE
Os.55296.1.S1_at--663--4151Chr07:6374481..6374505 (25 bp)
TCTTCCTTTCCTCTACCAAAGGATT
NONE
Os.55296.1.S1_at--591--9231Chr07:6374478..6374502 (25 bp)
TCCTTTCCTCTACCAAAGGATTTTG
NONE
Os.55296.1.S1_at--980--3671Chr07:6374476..6374500 (25 bp)
CTTTCCTCTACCAAAGGATTTTGTG
NONE
Os.55296.1.S1_at--510--10291Chr07:6374475..6374499 (25 bp)
TTTCCTCTACCAAAGGATTTTGTGT
NONE
Os.55296.1.S1_at--270--10651Chr07:6374474..6374498 (25 bp)
TTCCTCTACCAAAGGATTTTGTGTT
NONE
Target Sequence 
TTTCTTTTCTCTACCAAATTACTCGAGAAATTTTGTTTGTTTGGTCTACATCTGTGGTGGTTTTCTTCCTTTCCTCTACC
AAAGGATTTTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis