Browse Element(s) Details


Os.55333.1.S1_at

Description gb:AK107886.1
DB_XREF= gi:32993095
TID=Os.55333.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D12, full insert sequence.
FL= gb:AK107886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4311010/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43060OsAffx.20100.2.S1_at11/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.2.S1_x_at10/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.1.S1_x_at5/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.3.S1_x_at4/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43070OsAffx.7875.1.S1_at11/1112+26718582..26718956hypothetical protein
LOC_Os12g43080OsAffx.20097.1.S1_at10/1112+26719386..26722063hypothetical protein
LOC_Os12g43090Os.56160.1.S1_at11/1112+26723908..26725583expressed protein
LOC_Os12g43100Os.27272.1.S1_at11/1112+26726022..26728746PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g43110Os.55333.1.S1_at10/1112+26734618..26735291Auxin responsive protein, expressed
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein
LOC_Os12g43130Os.10025.1.S1_a_at11/1112+26746887..26749996Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os12g43140OsAffx.7876.1.S1_s_at11/1112+26759727..26760347expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55333.1.S1_at--496--9931NONE
TACCCGAGGTCCACGTGCCGGTGTA
NONE
Os.55333.1.S1_at--298--1871Chr12:26735052..26735076 (25 bp)
ACGACGACAGCGAGTAGCCGCGCGC
LOC_Os12g43110
Os.55333.1.S1_at--690--5791Chr12:26735077..26735101 (25 bp)
GGCCGGCCGTCGGTTGGGCTTGTGG
LOC_Os12g43110
Os.55333.1.S1_at--549--5811Chr12:26735126..26735150 (25 bp)
GACCCATTTGTAAATAGCTCGGAGA
LOC_Os12g43110
Os.55333.1.S1_at--831--3091Chr12:26735138..26735162 (25 bp)
AATAGCTCGGAGAACTTTGTGGTTC
LOC_Os12g43110
Os.55333.1.S1_at--850--5971Chr12:26735147..26735171 (25 bp)
GAGAACTTTGTGGTTCTTTGCCTTT
LOC_Os12g43110
Os.55333.1.S1_at--459--10811Chr12:26735154..26735178 (25 bp)
TTGTGGTTCTTTGCCTTTTAATTTG
LOC_Os12g43110
Os.55333.1.S1_at--345--8511Chr12:26735157..26735181 (25 bp)
TGGTTCTTTGCCTTTTAATTTGAGT
LOC_Os12g43110
Os.55333.1.S1_at--469--4271Chr12:26735202..26735226 (25 bp)
CCTGTCTAAGGGAATTTTGATGAGA
LOC_Os12g43110
Os.55333.1.S1_at--771--6591Chr12:26735231..26735255 (25 bp)
GATTGAGTGAGTGAAGACGATGTAA
LOC_Os12g43110
Os.55333.1.S1_at--529--2211Chr12:26735267..26735291 (25 bp)
AAATAAGTACGAGTGATGTTTAATT
LOC_Os12g43110
Target Sequence 
TACCCGAGGTCCACGTGCCGGTGTACGTGGTCGGGGAGGGGGATGGCGGCGAGGCGGCGGCGGCGGAGCGGTTCGTCGTG
CGCGCCGAGCTGCTCGGGCGGCCGGCGCTGGCCGAGCTCCTCCGCCGCGCCGCGCAGGAGTACGGCTACGACCACCACGG
CCCGCTCCGCATCCCCTGCCGCGCCGACGTCTTCCGCGCCGCGCTCGCCGCCGCCGGCGACGAGGACGACGACAGCGAGT
AGCCGCGCGCGGCCGGCCGTCGGTTGGGCTTGTGGGCCGGGCCGGGCCGGGCCGGGCTGGACCCATTTGTAAATAGCTCG
GAGAACTTTGTGGTTCTTTGCCTTTTAATTTGAGTTTTTTTTCCTTTTTATTTTCCCTGTCTAAGGGAATTTTGATGAGA
GAGTGATTGAGTGAGTGAAGACGATGTAAAATTGATAAGTAAATAAGTACGAGTGATGTTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis