Browse Element(s) Details


Os.55343.1.S1_at

Description gb:AK107905.1
DB_XREF= gi:32993114
TID=Os.55343.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F12, full insert sequence.
FL= gb:AK107905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5603011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein
LOC_Os04g56000OsAffx.14430.1.S1_s_at11/114+33133083..33133373hypothetical protein
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein
LOC_Os04g56040OsAffx.26624.1.S1_at11/114+33158271..33159338Glycine rich protein family protein, expressed
LOC_Os04g56050OsAffx.4189.1.S1_at11/114+33159721..33161165hypothetical protein
LOC_Os04g56060OsAffx.26625.1.S1_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_x_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_at7/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55343.1.S1_at--393--9451Chr04:33155880..33155904 (25 bp)
TCGGCTGTGCCGACGGGCCTAAAGA
LOC_Os04g56030
Os.55343.1.S1_at--988--8211Chr04:33155865..33155889 (25 bp)
GGCCTAAAGACAGCCCAAGAAGGAA
LOC_Os04g56030
Os.55343.1.S1_at--753--5851Chr04:33155647..33155749 (25 bp)
GACCAGCCTAGCTCGGATGCTCACG
LOC_Os04g56030
Os.55343.1.S1_at--1080--9991Chr04:33155639..33155663 (25 bp)
TAGCTCGGATGCTCACGGCGGGCAT
LOC_Os04g56030
Os.55343.1.S1_at--641--5171Chr04:33155416..33155440 (25 bp)
GCAAGCAGCGGATTCAGCGGTGGCG
LOC_Os04g56030
Os.55343.1.S1_at--1138--3211Chr04:33155348..33155372 (25 bp)
CTGACGTCACGGGAGTTAACTCGGC
LOC_Os04g56030
Os.55343.1.S1_at--130--3931Chr04:33155339..33155363 (25 bp)
CGGGAGTTAACTCGGCCACTGTACG
LOC_Os04g56030
Os.55343.1.S1_at--709--9811Chr04:33155332..33155356 (25 bp)
TAACTCGGCCACTGTACGTGTTGCT
LOC_Os04g56030
Os.55343.1.S1_at--910--3331Chr04:33155323..33155347 (25 bp)
CACTGTACGTGTTGCTTGCTACTAA
LOC_Os04g56030
Os.55343.1.S1_at--266--4931Chr04:33155310..33155334 (25 bp)
GCTTGCTACTAATATGTTGCCATTA
LOC_Os04g56030
Os.55343.1.S1_at--895--9891Chr04:33155304..33155328 (25 bp)
TACTAATATGTTGCCATTATGTACA
LOC_Os04g56030
Target Sequence 
TCGGCTGTGCCGACGGGCCTAAAGACAGCCCAAGAAGGAAGAAAGATAAGCGCCGCCGCCGCAGGGAAGACGGGGATGGT
GGCGGCGGCGACGGAGGCGATGGTGGTGGCGACGGGCCGGACGGCGGCGGCGATGGCGGTGATGGCGGCGGCGGCGACCA
GCCTAGCTCGGATGCTCACGGCGGGCATCACCACCATGGCCACGGACATGGCGGAGACAATGGCGGCGGACACCACCACC
ATGGCCACGGGCATGGCGGGGACCACGGCGGCGGCGGGCACCACCATCACCACGGGCATGGCGGAGACCATGGTGGAGGA
GGCTGGCACCACCATGGCGGAGACCATGGCGGCGGCGGCGGGCACCACTACTCCGGTGACCATGGGGCAAGCAGCGGATT
CAGCGGTGGCGGCTGCGGCGGCGGCGGCGGCGGCGGGGGTGGTGGTGGTGGGTTCTGACGTCACGGGAGTTAACTCGGCC
ACTGTACGTGTTGCTTGCTACTAATATGTTGCCATTATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis