Browse Element(s) Details


Os.55345.1.S1_at

Description gb:AK107909.1
DB_XREF= gi:32993118
TID=Os.55345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G04, full insert sequence.
FL= gb:AK107909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g197801/11O-methyltransferase ZRP4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19730OsAffx.18947.1.S1_x_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.52025.1.S1_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.53168.1.S2_at1/1111+11350958..11354295expressed protein
LOC_Os11g19740NANA11+11357009..11357236hypothetical protein
LOC_Os11g19750OsAffx.31066.1.S1_at11/1111+11358928..11359502hypothetical protein
LOC_Os11g19760OsAffx.31067.1.S1_at11/1111+11360832..11361489hypothetical protein
LOC_Os11g19770NANA11+11369451..11370238Argininosuccinate synthase, chloroplast precursor, putative
LOC_Os11g19780OsAffx.18948.1.S1_at11/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19780Os.55345.1.S1_at1/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19790OsAffx.18949.1.S1_at11/1111+11380615..11381951O-methyltransferase family protein
LOC_Os11g19800Os.46324.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19800OsAffx.31068.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19810OsAffx.18950.1.S1_x_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810OsAffx.18950.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_at10/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19820Os.46995.1.S1_x_at4/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19820Os.46995.1.S1_at3/1111+11396643..11399505retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55345.1.S1_at--154--10711Chr04:13286865..13286889 (25 bp)
TTGCTGTTCGCCTTCGAGTATTCAC
NONE
Os.55345.1.S1_at--812--6871Chr04:13286848..13286872 (25 bp)
GTATTCACGGCCAATCGAGGAGCAC
NONE
Os.55345.1.S1_at--179--5931Chr04:13286829..13286853 (25 bp)
GAGCACCAAGGACCGGCATGGTCTT
NONE
Os.55345.1.S1_at--844--3491Chr04:13286813..13286837 (25 bp)
CATGGTCTTTCTGCGCTGGGAAGAA
NONE
Os.55345.1.S1_at--836--2432Chr11:11374425..11374444 (20 bp)
AAAATGCCGGATCCGGTGGCCACAA
LOC_Os11g19780
Os.55345.1.S1_at--734--2691NONE
AAGCTCCTAGGCAGCAGACCTGGTA
NONE
Os.55345.1.S1_at--515--5831NONE
GACCTGGTAGCCTGGAGCTTGTCGC
NONE
Os.55345.1.S1_at--662--8531Chr04:13286461..13286485 (25 bp)
TGGACTCCGGCGTCGATAGGAACGA
NONE
Os.55345.1.S1_at--830--10371Chr04:13286410..13286434 (25 bp)
TTTTCTCTAACCGATCGATTACTTT
NONE
Os.55345.1.S1_at--275--10231Chr04:13286387..13286411 (25 bp)
TTTAAGCCCGATCAAATACTGTAGT
NONE
Os.55345.1.S1_at--437--8831Chr04:13286347..13286371 (25 bp)
TGATTATCTAATCCGGGCTACTGTT
NONE
Target Sequence 
TTGCTGTTCGCCTTCGAGTATTCACGGCCAATCGAGGAGCACCAAGGACCGGCATGGTCTTTCTGCGCTGGGAAGAAGAA
GGGGCTTCAGGAGGTCAGCTGGGGAAGAAGGGGCTTGAAGTTGAAGAGGAAGAAGAAGCCCGGTAGAAAATGCCGGATCC
GGTGGCCACAAGCTCCTAGGCAGCAGACCTGGTAGCCTGGAGCTTGTCGCCGGCCACAACGGCGGGGCGAGAACCATCCG
GCGAATGGCAGAGTCCGAACAAGCAACGGGATTCGGTGGGAAGGCAGGCGATGGGATCTTGTGGGGAGCTCGGCTGCGGA
GTCGAGCGATGAGCATCTTGGAGTTCGGCGGTGGGGAGCGAGCCGCGTGGTCCGGCGGTGAGGATTGAGCGACGATGAGC
AGCGTGGACTCCGGCGTCGATAGGAACGAGAAAGGCAACTCTTTTCTTTTATTTTTTTTCTCTAACCGATCGATTACTTT
TAAGCCCGATCAAATACTGTAGTTGAGTGGTTTTTTAATGATTATCTAATCCGGGCTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis