Browse Element(s) Details


Os.55356.1.S1_at

Description gb:AK107927.1
DB_XREF= gi:32993136
TID=Os.55356.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H10, full insert sequence.
FL= gb:AK107927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g115101/11Methyl-CpG binding domain containing protein
LOC_Os06g213501/11hypothetical protein
LOC_Os12g363101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11470OsAffx.13772.1.S1_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11470OsAffx.13772.1.S1_x_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11480OsAffx.10632.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.26189.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.7616.1.S1_at1/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11490NANA4+6264142..6265346retrotransposon protein, putative, unclassified
LOC_Os04g11500OsAffx.29419.3.S1_at2/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11500OsAffx.21161.1.S1_at1/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11510OsAffx.25982.1.S1_at11/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_x_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510OsAffx.25982.4.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11520NANA4+6282001..6283816hypothetical protein
LOC_Os04g11530OsAffx.25982.2.S1_at10/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11530OsAffx.25982.3.S1_at1/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11540NANA4+6302127..6304062retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55356.1.S1_at--11--712Chr02:14014207..14014231 (25 bp)
ATGAGTGGCTGAGCGCGTTCATGTC
NONE
Os.55356.1.S1_at--717--7532Chr02:14014211..14014235 (25 bp)
GTGGCTGAGCGCGTTCATGTCTACA
NONE
Os.55356.1.S1_at--555--4751Chr02:14014214..14014238 (25 bp)
GCTGAGCGCGTTCATGTCTACATCA
NONE
Os.55356.1.S1_at--1068--1651Chr02:14014218..14014242 (25 bp)
AGCGCGTTCATGTCTACATCACCGT
NONE
Os.55356.1.S1_at--1055--10531Chr02:14014224..14014248 (25 bp)
TTCATGTCTACATCACCGTGCTGGG
NONE
Os.55356.1.S1_at--1086--1772Chr02:14014238..14014262 (25 bp)
ACCGTGCTGGGCATGAAGGACATGA
NONE
Os.55356.1.S1_at--566--1512Chr02:14014336..14014360 (25 bp)
AGCAGCGACAGCAAGCGAGCGCGGT
NONE
Os.55356.1.S1_at--549--7691Chr02:14014521..14014545 (25 bp)
GGGTAGATCTGTACTTACACAGCTG
NONE
Os.55356.1.S1_at--207--4911Chr12:22197212..22197232 (21 bp)
ATCTGTACTTACACAGCTGTTTCTC
LOC_Os12g36310
Os.55356.1.S1_at--1077--9732Chr02:14014574..14014598 (25 bp)
TAAAATAATCCCGAGGGTGTCCAGT
NONE
Os.55356.1.S1_at--743--9252Chr02:14014579..14014603 (25 bp)
TAATCCCGAGGGTGTCCAGTAGCTA
NONE
Target Sequence 
ATGAGTGGCTGAGCGCGTTCATGTCTACATCACCGTGCTGGGCATGAAGGACATGAAGCCATGGAGCAGTAGCACCGGCG
ACAGTGGGCGAGCGAAGGAGGAGCGGCAACGGCAGGCGAGCCTGGGAGGAGCAGCGACAGCAAGCGAGCGCGGTGGGCGG
AGCAGCGACAGTGGGCGAGCATAGGAGGAGCGGCGGCGGCCGCGGGCGAGGTTGAAGGCGACGGTTGAGAGCAGAGAGAG
AGAGAGAGAGAGAGAGAGAACGAGAGAGGGAGAAAAGGATAAGGAAGAAAAAAGAAAAAGAAAAAAAAATCAAAGGGTAG
ATCTGTACTTACACAGCTGTTTCTCTCTCCAATTCTTCCGGATATAATAAAATAATCCCGAGGGTGTCCAGTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis