Browse Element(s) Details


Os.55366.1.S1_at

Description gb:AK107954.1
DB_XREF= gi:32993163
TID=Os.55366.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C02, full insert sequence.
FL= gb:AK107954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g464201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55366.1.S1_at--815--9231Chr07:27698966..27699122 (25 bp)
TCCATGTGCATCTTCGGGCTCAAGA
LOC_Os07g46420
Os.55366.1.S1_at--96--31Chr07:27699300..27699324 (25 bp)
ATTGGAATTGGATATTCAGCCATTC
NONE
Os.55366.1.S1_at--219--7951Chr07:27699309..27699333 (25 bp)
GGATATTCAGCCATTCAGGTCGTCG
NONE
Os.55366.1.S1_at--1004--10211Chr07:27699312..27699336 (25 bp)
TATTCAGCCATTCAGGTCGTCGTAG
NONE
Os.55366.1.S1_at--1047--9651Chr07:27699315..27699339 (25 bp)
TCAGCCATTCAGGTCGTCGTAGTAG
NONE
Os.55366.1.S1_at--781--8751Chr07:27699490..27699514 (25 bp)
TGTAGCCTCCCTTGATATCAAAATT
NONE
Os.55366.1.S1_at--877--4451Chr07:27699494..27699518 (25 bp)
GCCTCCCTTGATATCAAAATTCAGA
NONE
Os.55366.1.S1_at--849--5231Chr07:27699517..27699541 (25 bp)
GAATCAATGGATGCAAGTTTCTATT
NONE
Os.55366.1.S1_at--1158--6311Chr07:27699526..27699550 (25 bp)
GATGCAAGTTTCTATTTCTGAACCA
NONE
Os.55366.1.S1_at--910--6831Chr07:27699533..27699557 (25 bp)
GTTTCTATTTCTGAACCAAAATGGA
NONE
Os.55366.1.S1_at--400--2651Chr07:27699546..27699571 (25 bp)
AACCAAAATGGATCAAGTTCTATTT
NONE
Target Sequence 
TCCATGTGCATCTTCGGGCTCAAGACGATACTGATACCGTACCGTACGAACCTGGTGCGGCTGCAAACCGGGCCGAATTA
CGCCGACGCCTTCGCCGATTTCGTCAAGAGGGTCGCCTCGTCGTCGGGGAGGCCGACCGGTGGCAACAAGCAGAGAATGT
GAGAGCATTTGTGATCACAATGGCGCAGGATGAATCCAACTAATTGGAATTGGATATTCAGCCATTCAGGTCGTCGTAGT
AGTTGTGTATAGCTCAAGTTTTGATTCGAACCCGGCGAGGCGGCGTCGCGGCGAGGGGATTGTTTGTATCCTGTTCTAAT
GGGTATTAGTTGATGAGAATCTTGGGATCTTCACTGTGAATATAGCTTAGCACATGATTTATTATATCAAAATGTAGCCT
CCCTTGATATCAAAATTCAGAATCAATGGATGCAAGTTTCTATTTCTGAACCAAAATGGATCAAGTTCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis