Browse Element(s) Details


Os.55369.1.S1_at

Description gb:AK107958.1
DB_XREF= gi:32993167
TID=Os.55369.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C06, full insert sequence.
FL= gb:AK107958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3297011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32950NANA2+19561764..19562928SELF-PRUNING protein, putative, expressed
LOC_Os02g32960OsAffx.28970.3.S1_x_at11/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.4.S1_at7/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_x_at2/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_at1/112+19578621..19579323hypothetical protein
LOC_Os02g32970Os.55369.1.S1_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32970Os.17164.1.S1_s_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32980Os.50966.1.S1_at11/112+19591678..19592747Germin-like protein subfamily 3 member 2 precursor, putative, expressed
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55369.1.S1_at--183--8411Chr02:19585475..19585499 (25 bp)
GGCGCGCCTCACGTCTATATAGACA
LOC_Os02g32970
Os.55369.1.S1_at--373--3311Chr02:19585723..19585747 (25 bp)
CACATCCGGTTCGTCGTTCGTTCGT
LOC_Os02g32970
Os.55369.1.S1_at--734--9231Chr02:19585761..19585785 (25 bp)
TCCTTCTAGGAACACGCGTGCTGCG
LOC_Os02g32970
Os.55369.1.S1_at--703--3491Chr02:19585799..19585823 (25 bp)
CATCGCCTTTTTGCTTTGTTAATTT
LOC_Os02g32970
Os.55369.1.S1_at--613--9751Chr02:19585818..19585842 (25 bp)
TAATTTCTCGTGTTCAACGCAGCGT
LOC_Os02g32970
Os.55369.1.S1_at--356--3251Chr02:19585832..19585856 (25 bp)
CAACGCAGCGTTTGTTTCGTAGTAC
LOC_Os02g32970
Os.55369.1.S1_at--161--6831Chr02:19585845..19585869 (25 bp)
GTTTCGTAGTACGTCGTCGTAGCCT
LOC_Os02g32970
Os.55369.1.S1_at--413--7211Chr02:19585860..19585884 (25 bp)
GTCGTAGCCTGTTCGTGATTTGCCA
LOC_Os02g32970
Os.55369.1.S1_at--400--4771Chr02:19585887..19585911 (25 bp)
GCTCCCTGTTTTTACAATTTTGCTG
LOC_Os02g32970
Os.55369.1.S1_at--765--8751Chr02:19585910..19585934 (25 bp)
TGTATAATCAGCTCGGTTGCGGTCT
LOC_Os02g32970
Os.55369.1.S1_at--127--6671Chr02:19585925..19585949 (25 bp)
GTTGCGGTCTCGATCTCAAGATTGA
LOC_Os02g32970
Target Sequence 
GGCGCGCCTCACGTCTATATAGACACTCACGGGGGCCGCGTCGTCTCCATGCCCTCACCCTCGCGCACTCCCATTCCCAT
CCTCCACATCCCGCGCCATCGACCTCCTCTCCCCGGGACCGCGTCGCTCGCGCGTTGCCTCCACCTCCAGTAGCAAGTAT
CAATGGCGGACTCCGGCAAGAAGCGGGACGGGTCGGCCAACGGCGCCGAGAAGAAGGCGTCGCCGACGCCGAAGCCGCCG
TCCTCCTCCACATCCGGTTCGTCGTTCGTTCGTCCTCTCCCCTCCCTCCTTCTAGGAACACGCGTGCTGCGGCCTGCGTG
CGCCCATCGCCTTTTTGCTTTGTTAATTTCTCGTGTTCAACGCAGCGTTTGTTTCGTAGTACGTCGTCGTAGCCTGTTCG
TGATTTGCCACCGCTCCCTGTTTTTACAATTTTGCTGTATAATCAGCTCGGTTGCGGTCTCGATCTCAAGATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis