Browse Element(s) Details


Os.55458.1.S1_at

Description gb:AK108122.1
DB_XREF= gi:32993331
TID=Os.55458.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D01, full insert sequence.
FL= gb:AK108122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2076010/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20720NANA3+11704104..11708699GTPase activating protein, putative, expressed
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os03g20760Os.55458.1.S1_at10/113+11730705..11732232Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g20770OsAffx.12956.1.S1_at11/113+11733805..11735597hypothetical protein
LOC_Os03g20780Os.12691.1.A1_a_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.3.S1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.1.A1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.2.S1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.3.S1_x_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_x_at5/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.4.S1_at1/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55458.1.S1_at--416--9671Chr03:11730979..11731003 (25 bp)
TCACCTACGTGGAGTACCGGAGCAC
LOC_Os03g20760
Os.55458.1.S1_at--85--6171NONE
GAGGAGTCAGGGTTGTCCGGCGGCA
NONE
Os.55458.1.S1_at--123--10811Chr03:11731990..11732014 (25 bp)
TTGTCCGGCGGCATGCCGGCCAACG
LOC_Os03g20760
Os.55458.1.S1_at--278--10572Chr11:21083183..21083207 (25 bp)
TTCTTCTGCTGCTCCTGGTGTTCCC
NONE
Os.55458.1.S1_at--1048--10632Chr11:21083211..21083235 (25 bp)
TTCGCTGCTGCTCCTGTAAAACTAC
NONE
Os.55458.1.S1_at--882--5052Chr04:4802131..4802159 (25 bp)
GCAGCACACATCTGACCTGTACATG
NONE
Os.55458.1.S1_at--1087--3292Chr04:4802135..4802163 (25 bp)
CACACATCTGACCTGTACATGCATG
NONE
Os.55458.1.S1_at--894--9873Chr07:14649828..14649852 (25 bp)
TACATGCATGTACACCGTTCGTCGA
NONE
Os.55458.1.S1_at--74--8753Chr07:14649836..14649859 (24 bp)
TGTACACCGTTCGTCGATTCAATTC
NONE
Os.55458.1.S1_at--66--10631Chr03:11732198..11732222 (25 bp)
TTCGTCGATTCAATTCCTCTCAGAA
LOC_Os03g20760
Os.55458.1.S1_at--20--9751Chr03:11732207..11732231 (25 bp)
TCAATTCCTCTCAGAATTCTTCCGT
LOC_Os03g20760
Target Sequence 
TCACCTACGTGGAGTACCGGAGCACGCTGACCCGGCCGGACAAGGGCTGCTGCGGCGCGCTCGCGGGCGTCGTCGACGGC
GAGGCCGCCTGCCTGTGCGGACTCGTCGGCGGGTACGGCGCGTACGGGGTCCGCGTCGACGCCGTCCGCGCCCTCGCGCT
GCCCACCATCTGCCGCGTCGACGCGCCCCCGCCCAGGCTCTGCGCCGCGCTCGGTGTGCCCGTCGCCGAGCCGCCGGGCG
GCGCCGTGCCGGAGGAGTCAGGGTTGTCCGGCGGCATGCCGGCCAACGCACCGTCAACGGCGGCCACCGGCAGCAGCGGC
GGCGGCGGTCCGGCGACGCACCGACCCACAAGACGCCACCTGATTCTTCTTCTGCTGCTCCTGGTGTTCCCCGCTTCGCT
GCTGCTCCTGTAAAACTACCCCGTCACACCGGCAAGCAGCACACATCTGACCTGTACATGCATGTACACCGTTCGTCGAT
TCAATTCCTCTCAGAATTCTTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis