Browse Element(s) Details


Os.55459.1.S1_at

Description gb:AK108123.1
DB_XREF= gi:32993332
TID=Os.55459.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D02, full insert sequence.
FL= gb:AK108123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5799010/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55459.1.S1_at--873--891Chr03:32967066..32967090 (25 bp)
AGGCGCCGCCTGTTGCTTCGACGGA
LOC_Os03g57990
Os.55459.1.S1_at--885--7731Chr03:32967105..32967129 (25 bp)
GGTGTATGCCGGAGCTCGTCAGCCT
LOC_Os03g57990
Os.55459.1.S1_at--375--4351NONE
CCAGCCAGTGCAACGCAGCGGGAGT
NONE
Os.55459.1.S1_at--994--6051Chr03:32967773..32967797 (25 bp)
GAGTTCCGGTGTCATCTCCGGCGAA
LOC_Os03g57990
Os.55459.1.S1_at--209--1071Chr03:32967834..32967858 (25 bp)
AGGGACTCCTGGATCGAAGACCACT
LOC_Os03g57990
Os.55459.1.S1_at--29--9891Chr03:32967870..32967894 (25 bp)
TACTCAATACTCTGACGGAAGCGTT
LOC_Os03g57990
Os.55459.1.S1_at--267--5411Chr03:32967887..32967911 (25 bp)
GAAGCGTTAACAGATCTCGGGTGAT
LOC_Os03g57990
Os.55459.1.S1_at--428--9431Chr03:32967903..32967927 (25 bp)
TCGGGTGATATTGGTCATCCTCGTC
LOC_Os03g57990
Os.55459.1.S1_at--47--4131Chr03:32967927..32967951 (25 bp)
CGCAGCGATTGTTGTGTTTCTTGAT
LOC_Os03g57990
Os.55459.1.S1_at--334--6451Chr03:32967949..32967973 (25 bp)
GATCACTTTTGAGTTCTTCAGTACA
LOC_Os03g57990
Os.55459.1.S1_at--89--331Chr03:32967974..32967998 (25 bp)
ATAAGTCATATTGTTCGTTTTACCT
LOC_Os03g57990
Target Sequence 
AGGCGCCGCCTGTTGCTTCGACGGACGGCGGCGGGTCGGGGTGTATGCCGGAGCTCGTCAGCCTGTCGCCCTGCATGGGG
TACATGTCGGGGAACGCGACGGCGCCGGCGGCGGCGTGCTGCTCGGCGCTGTCCGGCGTGCTGAGGTCGAGCCCGCGGTG
CCTCTGCATGGTGCTCGGCGGCACGGCGGCGTCGCTCGGCGTCGCCGTGGACACCGCACGCGCGGTGCTGCTCCCCGGCG
CCTGCAGCGTCCAGGCCCCACCTGCCAGCCAGTGCAACGCAGCGGGAGTTCCGGTGTCATCTCCGGCGAACCCGACGACA
TCCGGCGGTACTCCGGCGACGCCAGCAGGGACTCCTGGATCGAAGACCACTCCAGCATCCACTACTCAATACTCTGACGG
AAGCGTTAACAGATCTCGGGTGATATTGGTCATCCTCGTCGCAGCGATTGTTGTGTTTCTTGATCACTTTTGAGTTCTTC
AGTACAATAAGTCATATTGTTCGTTTTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis