Browse Element(s) Details


Os.55478.1.S1_at

Description gb:AK108157.1
DB_XREF= gi:32993366
TID=Os.55478.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G08, full insert sequence.
FL= gb:AK108157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g614502/11hypothetical protein
LOC_Os12g392901/11hypothetical protein
LOC_Os01g346801/11hypothetical protein
LOC_Os03g206901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g058501/11Sm protein
LOC_Os08g196601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein
LOC_Os01g61470OsAffx.23883.1.S1_x_at11/111+35874750..35875319Zinc finger, C3HC4 type family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55478.1.S1_at--101--1911Chr12:24143787..24143811 (25 bp)
ACGGGAAGCACCACGGTAGTCGCCG
LOC_Os12g39290
Os.55478.1.S1_at--1129--10011Chr12:24143694..24143718 (25 bp)
TAGAAGCCGCCGTACCTATACGCAT
NONE
Os.55478.1.S1_at--527--6293Chr03:22099960..22099982 (23 bp)
GATGATACGTGGGTCCTACAATATA
NONE
Os.55478.1.S1_at--403--68145Chr12:24144777..24144799 (23 bp)
GTTTTTATTCTAATGCCACGTAAGT
NONE
Os.55478.1.S1_at--667--4632Chr12:24143472..24143496 (25 bp)
GCTACGTAGGAAAAGACTCGGTCAA
NONE
Os.55478.1.S1_at--411--2432Chr05:16793100..16793120 (21 bp)
AAAACCGTCACGTAGGCGCCATATC
NONE
Os.55478.1.S1_at--191--214Chr11:27696115..27696139 (25 bp)
ATATTGTTTACACCGGTTTTGATAG
NONE
Os.55478.1.S1_at--929--61733Chr11:19625883..19625906 (24 bp)
GAGGAGTCGATATACCCGGTTTTGT
NONE
Os.55478.1.S1_at--974--10351Chr12:24143275..24143299 (25 bp)
TTTTTTGGCCCAGATGATACTTGTG
NONE
Os.55478.1.S1_at--382--3431Chr12:24143265..24143289 (25 bp)
CAGATGATACTTGTGTTGGGCCGTC
NONE
Os.55478.1.S1_at--105--8811Chr12:24143252..24143276 (25 bp)
TGTTGGGCCGTCATTTTTCTTTTCG
NONE
Target Sequence 
ACGGGAAGCACCACGGTAGTCGCCGTTGCCGGCTCGACGGGCATCTCGGCCACCAGCTGCTTCTCGTTGCCATGGAATCC
CTCCCCACGGTGGTAGAAGCCGCCGTACCTATACGCATCCCGCCGGTGGAGGCCGCCGCTCCTCCGGTGAAGAGAAAAGC
CGGGGGGAGAGAGAGAGGTAAAGGAGAGAGAGGGGGAGGAAGAAGGGAAGGAGAGGGAGGATGATACGTGGGTCCTACAA
TATATATATTTTTTGTATGACATATGGGTCCCACATATTTTTTAATTTTTGTTTTTATTCTAATGCCACGTAAGTGCTAC
GTAGGAAAAGACTCGGTCAAAACCGTCACGTAGGCGCCATATCAGCCAAAACCAGGGATATTGTTTACACCGGTTTTGAT
AGTTGGAGGAGTCGATATACCCGGTTTTGTGGTTGGAGGATATGAATACTCGGACGATAGTTGAGGGAGTCAAATTATAC
TTTTTCCAAAAGTTAATGTACGTCCGTTTGCTTTTTTTGGCCCAGATGATACTTGTGTTGGGCCGTCATTTTTCTTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis