Browse Element(s) Details


Os.55490.1.S1_at

Description gb:AK108188.1
DB_XREF= gi:32993397
TID=Os.55490.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B11, full insert sequence.
FL= gb:AK108188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1000010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09960OsAffx.27541.1.S1_at10/116+5081730..5083092expressed protein
LOC_Os06g09960OsAffx.24432.1.S1_at3/116+5081730..5083092expressed protein
LOC_Os06g09970OsAffx.4783.1.S1_at11/116+5084604..5085091hypothetical protein
LOC_Os06g09980Os.54864.2.S1_at11/116+5089958..5091121expressed protein
LOC_Os06g09990OsAffx.27542.1.S1_s_at11/116+5096036..5096381hypothetical protein
LOC_Os06g09990Os.39031.1.S1_at5/116+5096036..5096381hypothetical protein
LOC_Os06g10000Os.55490.1.S1_at10/116+5101390..5102442expressed protein
LOC_Os06g10000Os.57449.1.S1_x_at1/116+5101390..5102442expressed protein
LOC_Os06g10010NANA6+5103666..5104193hypothetical protein
LOC_Os06g10020Os.56042.1.S1_at11/116+5105166..5105930expressed protein
LOC_Os06g10030NANA6+5108369..5108719hypothetical protein
LOC_Os06g10040NANA6+5117540..5117878hypothetical protein
LOC_Os06g10050NANA6+5120690..5121061hypothetical protein
LOC_Os06g10060OsAffx.23916.1.S1_at1/116+5124394..5124768hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55490.1.S1_at--8--10651Chr06:5102017..5102041 (25 bp)
TTCGCCTTGAAGAACCCAATCATCC
LOC_Os06g10000
Os.55490.1.S1_at--1141--3751Chr06:5102095..5102119 (25 bp)
CTCTTCTTCCGCAAGGCGCAAAATG
LOC_Os06g10000
Os.55490.1.S1_at--1012--1251Chr06:5102174..5102198 (25 bp)
AGATTATCTCGGACGGTGCCAATCC
LOC_Os06g10000
Os.55490.1.S1_at--747--1771Chr06:5102250..5102274 (25 bp)
ACCGTGTACTACCTGGAGTCTGGAA
LOC_Os06g10000
Os.55490.1.S1_at--104--6111Chr06:5102265..5102289 (25 bp)
GAGTCTGGAATCACCGTACTGTCAT
LOC_Os06g10000
Os.55490.1.S1_at--1071--6991NONE
GTACTGTCATCGCATTCGTGCAGTG
NONE
Os.55490.1.S1_at--87--4011Chr06:5102296..5102320 (25 bp)
CGTGCAGTGCAGAGTGTAGTCCTGT
LOC_Os06g10000
Os.55490.1.S1_at--78--6931Chr06:5102311..5102335 (25 bp)
GTAGTCCTGTAATGCTAATACTCAT
LOC_Os06g10000
Os.55490.1.S1_at--467--9751Chr06:5102326..5102350 (25 bp)
TAATACTCATGCTCAGCTCGTGCAG
LOC_Os06g10000
Os.55490.1.S1_at--557--1911Chr06:5102358..5102382 (25 bp)
ACGTGACTGCGTGAGCTATTGTGAT
LOC_Os06g10000
Os.55490.1.S1_at--653--51Chr06:5102389..5102413 (25 bp)
ATTGTTGATTCGTTCTGTATTCAGG
LOC_Os06g10000
Target Sequence 
TTCGCCTTGAAGAACCCAATCATCCACGCGCCCACCGGCGTCGCCACCGCCGCCGTCGTCGGCACCACGCTTCTCGCCCT
CTTCTTCCGCAAGGCGCAAAATGCGGCGGCCGCGGCCGCGGCCGCTGCCCCACTACCGGCCACGGAGCGCGCCGCCAAGA
TTATCTCGGACGGTGCCAATCCCGGCGGCGGCTGCACGTGAAGGTTCCCGCGCCGCGAGCCCGCGACGCGGCCACCGTGT
ACTACCTGGAGTCTGGAATCACCGTACTGTCATCGCATTCGTGCAGTGCAGAGTGTAGTCCTGTAATGCTAATACTCATG
CTCAGCTCGTGCAGATGGGGAACGTGACTGCGTGAGCTATTGTGATGTTTTAATTGTTGATTCGTTCTGTATTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis