Browse Element(s) Details


Os.55501.1.S1_at

Description gb:AK108211.1
DB_XREF= gi:32993420
TID=Os.55501.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D10, full insert sequence.
FL= gb:AK108211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0717011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07120Os.17204.1.S1_at11/112+3659130..3669320HEAT repeat family protein, expressed
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55501.1.S1_at--704--1551Chr02:3682832..3682856 (25 bp)
AGCTTCAGCTTCCTTGCAACAAGAA
LOC_Os02g07170
Os.55501.1.S1_at--153--3171Chr02:3682665..3682689 (25 bp)
AATTGGGAGCCATAGCCACCAGAGA
LOC_Os02g07170
Os.55501.1.S1_at--663--8331Chr02:3682601..3682625 (25 bp)
GGCTGCGAGCTGACGCTGTCGATCA
LOC_Os02g07170
Os.55501.1.S1_at--456--4711Chr02:3682573..3682597 (25 bp)
GCGGCGCCGCTGAAGAATCGAAAGA
LOC_Os02g07170
Os.55501.1.S1_at--979--5551Chr02:3682554..3682578 (25 bp)
GAAAGACGGTGGCTCGAGCATCACC
LOC_Os02g07170
Os.55501.1.S1_at--675--8391Chr02:3682497..3682521 (25 bp)
GGCGCCTAACATCATCAACGACGAC
LOC_Os02g07170
Os.55501.1.S1_at--1119--9611Chr02:3682449..3682473 (25 bp)
TCATCCTTTTGCTTGTTCCACACAG
LOC_Os02g07170
Os.55501.1.S1_at--471--8331Chr02:3682413..3682437 (25 bp)
GGCGGCCATTAACCTTGAACTTACG
LOC_Os02g07170
Os.55501.1.S1_at--702--8971Chr02:3682398..3682422 (25 bp)
TGAACTTACGATTTCTTCTCCTTGC
LOC_Os02g07170
Os.55501.1.S1_at--123--10711Chr02:3682377..3682401 (25 bp)
TTGCTGCTGGCTCACCTAGAAAATA
LOC_Os02g07170
Os.55501.1.S1_at--875--10171Chr02:3682354..3682378 (25 bp)
TATACATGTACTCCTAGAAGCTAGC
LOC_Os02g07170
Target Sequence 
AGCTTCAGCTTCCTTGCAACAAGAACGGTGCCAGCAGCTGGAATTGGGAGCCATAGCCACCAGAGACCTCACCGGCGGCA
AGCGCTGCACGCCGGAGACGACGACGGCTGCGAGCTGACGCTGTCGATCAGCGGCGGCGCCGCTGAAGAATCGAAAGACG
GTGGCTCGAGCATCACCGACGACGACGACGAGCTTCTGATCCAGCCACCGGCGCCTAACATCATCAACGACGACGGATCA
ACGCGGCATGGTCGTCGTCATCCTTTTGCTTGTTCCACACAGCCGCTGCCGCCGGCGGCCATTAACCTTGAACTTACGAT
TTCTTCTCCTTGCTGCTGGCTCACCTAGAAAATATACATGTACTCCTAGAAGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis