Browse Element(s) Details


Os.55513.1.S1_at

Description gb:AK108233.1
DB_XREF= gi:32993442
TID=Os.55513.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G05, full insert sequence.
FL= gb:AK108233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1181011/11dehydration stress-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55513.1.S1_at--184--2631Chr06:6253179..6253203 (25 bp)
AACCTGGACGTGTTCAGCGGCCGCG
LOC_Os06g11810
Os.55513.1.S1_at--506--4251Chr06:6252902..6252926 (25 bp)
CCGGCGGTGGCTTGGCAATAGTAAT
LOC_Os06g11810
Os.55513.1.S1_at--322--2431Chr06:6252868..6252892 (25 bp)
AAAACGGAGAGCTGTTCACGTGTGT
LOC_Os06g11810
Os.55513.1.S1_at--189--5891Chr06:6252860..6252884 (25 bp)
GAGCTGTTCACGTGTGTAGGCTTAC
LOC_Os06g11810
Os.55513.1.S1_at--241--6931Chr06:6252845..6252869 (25 bp)
GTAGGCTTACGAATGGACGCGTGCT
LOC_Os06g11810
Os.55513.1.S1_at--472--9091Chr06:6252824..6252848 (25 bp)
TGCTCACAGGCGTCGATCTGTTTGA
LOC_Os06g11810
Os.55513.1.S1_at--8--491Chr06:6252809..6252833 (25 bp)
ATCTGTTTGAGTTGGCTCTTGTCTC
LOC_Os06g11810
Os.55513.1.S1_at--576--10871Chr06:6252798..6252822 (25 bp)
TTGGCTCTTGTCTCCGAACTCTGTT
LOC_Os06g11810
Os.55513.1.S1_at--59--2551Chr06:6252782..6252806 (25 bp)
AACTCTGTTCTGCTTGCACTTCCTT
LOC_Os06g11810
Os.55513.1.S1_at--719--2051Chr06:6252765..6252789 (25 bp)
ACTTCCTTTGCTTGGCCTGTGCCCA
LOC_Os06g11810
Os.55513.1.S1_at--555--7291Chr06:6252747..6252771 (25 bp)
GTGCCCACTGGATAACCAACAGCAT
LOC_Os06g11810
Target Sequence 
AACCTGGACGTGTTCAGCGGCCGCGGCCCGTGCCTCCCGGCGGCGCCGTGCTGGATGAACCTCACCTCCGACGGCGCCGG
CGCCCACCACGGGTGGTACTGCAACTACGTCGAGGTGACGGCCACCGGCCCGCACGGCGGGTGCGCGCAGCGGCGGTTCG
ACGTCGAGCAGTGGCTCGCCACCGACGCCTCGCCGTACCGGCTCACCGCCGTGCGCGACCAGTGCCGGGGCCACGCCGCG
GCGTGACGCCACCGCGGTGGCGCGAGCGCACCGCTCGCCGGCGGTGGCTTGGCAATAGTAATAACGTAAATAAAACGGAG
AGCTGTTCACGTGTGTAGGCTTACGAATGGACGCGTGCTCACAGGCGTCGATCTGTTTGAGTTGGCTCTTGTCTCCGAAC
TCTGTTCTGCTTGCACTTCCTTTGCTTGGCCTGTGCCCACTGGATAACCAACAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis