Browse Element(s) Details


Os.55585.1.S1_at

Description gb:AK108363.1
DB_XREF= gi:32993572
TID=Os.55585.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C12, full insert sequence.
FL= gb:AK108363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4223011/11AT-hook protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42202NANA10+22384303..22389591hypothetical protein
LOC_Os10g42210Os.2764.1.S1_s_at11/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42210Os.2764.2.S1_x_at7/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42220Os.47000.1.S1_x_at10/1110+22407927..224104303-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42230Os.55585.1.S1_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42230Os.2750.2.S1_a_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42234NANA10+22417063..22417866NA
LOC_Os10g42240Os.7866.1.S1_at11/1110+22420567..22423416carbohydrate kinase, putative, expressed
LOC_Os10g42250Os.20189.1.S1_at10/1110+22424448..22426914expressed protein
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55585.1.S1_at--45--7771Chr10:22414714..22414738 (25 bp)
GGTGATGGATCTATGTCTGCTTTTC
LOC_Os10g42230
Os.55585.1.S1_at--955--6511Chr10:22414679..22414703 (25 bp)
GATTTGGTGCACGTACTAACTCCAC
LOC_Os10g42230
Os.55585.1.S1_at--471--6331Chr10:22414494..22414518 (25 bp)
GATGCACCTACGTTGTCGTGGACTA
LOC_Os10g42230
Os.55585.1.S1_at--382--7431Chr10:22414468..22414492 (25 bp)
GTGTAGTAGTACTCCTATCATCAAG
LOC_Os10g42230
Os.55585.1.S1_at--587--9731Chr10:22414448..22414472 (25 bp)
TCAAGTACAACAAGCCTTCTCTGGC
LOC_Os10g42230
Os.55585.1.S1_at--899--8331Chr10:22414422..22414446 (25 bp)
GGCTGTGTAGTAGTACGCTGTCCAA
LOC_Os10g42230
Os.55585.1.S1_at--478--2171Chr10:22414345..22414369 (25 bp)
ACACCTGCACTGTCTTGTTCATAGT
LOC_Os10g42230
Os.55585.1.S1_at--823--7191Chr10:22414322..22414346 (25 bp)
GTCGGATACAATTGCCTCTACTGAT
LOC_Os10g42230
Os.55585.1.S1_at--602--10091Chr10:22414298..22414322 (25 bp)
TAGGAACTAGGAGCACTCGCCTGCA
LOC_Os10g42230
Os.55585.1.S1_at--362--1152Chr08:18556095..18556478 (25 bp)
AGTCTCCTGTTGTGGTGTGCTTAGA
NONE
Os.55585.1.S1_at--950--1231Chr10:22414247..22414271 (25 bp)
AGTTCCATGTTTACTGCGCATCTGA
LOC_Os10g42230
Target Sequence 
GGTGATGGATCTATGTCTGCTTTTCCTGCGGAGTGGATTTGGTGCACGTACTAACTCCACTCCACTCCACTCCAGCCATG
ACCATGACCATCACTGGTTAGGTTGGAAAGGAACCAACCAAGGTTGCGAGACGAGGACGAGCTGCGGTGTCCGTCAGATT
CCCAGCATGGCTGTCGGTTGACCGGCCCCGGCCCCACGGTCAGCGGCACAGATAGTGGGCGATGCACCTACGTTGTCGTG
GACTACGTGTAGTAGTACTCCTATCATCAAGTACAACAAGCCTTCTCTGGCTGGCTGTGTAGTAGTACGCTGTCCAACAG
CAAGTAGTAGTAGTAGCCACACCTGTGGACTGTGACTGTCCACAACTCCACACCTGCACTGTCTTGTTCATAGTCGGATA
CAATTGCCTCTACTGATAGGAACTAGGAGCACTCGCCTGCAGGAGTCTCCTGTTGTGGTGTGCTTAGAGTTCCATGTTTA
CTGCGCATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis