Browse Element(s) Details


Os.55623.1.S1_at

Description gb:AK108432.1
DB_XREF= gi:32993641
TID=Os.55623.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B01, full insert sequence.
FL= gb:AK108432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g425709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55623.1.S1_at--465--1751Chr08:26773693..26773717 (25 bp)
ACCTAATCACACACCTACTATTGCA
LOC_Os08g42570
Os.55623.1.S1_at--4--3751Chr08:26773695..26773719 (25 bp)
CTAATCACACACCTACTATTGCATG
LOC_Os08g42570
Os.55623.1.S1_at--913--3071Chr08:26773697..26773721 (25 bp)
AATCACACACCTACTATTGCATGTA
LOC_Os08g42570
Os.55623.1.S1_at--181--3312Chr08:26773700..26773724 (25 bp)
CACACACCTACTATTGCATGTATTG
LOC_Os08g42570
Os.55623.1.S1_at--421--3311Chr08:26773702..26773726 (25 bp)
CACACCTACTATTGCATGTATTGTA
LOC_Os08g42570
Os.55623.1.S1_at--584--1751Chr08:26773705..26773729 (25 bp)
ACCTACTATTGCATGTATTGTATCG
LOC_Os08g42570
Os.55623.1.S1_at--465--3731Chr08:26773707..26773731 (25 bp)
CTACTATTGCATGTATTGTATCGTA
LOC_Os08g42570
Os.55623.1.S1_at--236--10371Chr08:26773740..26773764 (25 bp)
TTTTTTAATCCCATTCTTGGAAGAG
LOC_Os08g42570
Os.55623.1.S1_at--849--10331Chr08:26773743..26773767 (25 bp)
TTTAATCCCATTCTTGGAAGAGATC
LOC_Os08g42570
Os.55623.1.S1_at--13--3051Chr08:26773746..26773770 (25 bp)
AATCCCATTCTTGGAAGAGATCATT
NONE
Os.55623.1.S1_at--510--10551Chr08:26773753..26773777 (25 bp)
TTCTTGGAAGAGATCATTAGCGCAT
NONE
Target Sequence 
ACCTAATCACACACCTACTATTGCATGTATTGTATCGTATCGTACCTTTTTTTAATCCCATTCTTGGAAGAGATCATTAG
CGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis