Browse Element(s) Details


Os.55623.1.S1_s_at

Description gb:AK108432.1
DB_XREF= gi:32993641
TID=Os.55623.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B01, full insert sequence.
FL= gb:AK108432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4257011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55623.1.S1_s_at--464--2211Chr08:26772566..26772590 (25 bp)
ACAAGTGGCGCTACCTCCGCGACCT
LOC_Os08g42570
Os.55623.1.S1_s_at--328--10531Chr08:26772742..26772766 (25 bp)
TTCATCGTCGAGTTCTTCCTCAAGG
LOC_Os08g42570
Os.55623.1.S1_s_at--174--511Chr08:26772745..26772769 (25 bp)
ATCGTCGAGTTCTTCCTCAAGGGCG
LOC_Os08g42570
Os.55623.1.S1_s_at--1052--3991Chr08:26772747..26772771 (25 bp)
CGTCGAGTTCTTCCTCAAGGGCGAG
LOC_Os08g42570
Os.55623.1.S1_s_at--728--9371Chr08:26772749..26772773 (25 bp)
TCGAGTTCTTCCTCAAGGGCGAGGA
LOC_Os08g42570
Os.55623.1.S1_s_at--271--1231Chr08:26772752..26772776 (25 bp)
AGTTCTTCCTCAAGGGCGAGGACCG
LOC_Os08g42570
Os.55623.1.S1_s_at--575--9371Chr08:26772794..26772818 (25 bp)
TCGACGCCGCGTGGGCGATGCAGAA
LOC_Os08g42570
Os.55623.1.S1_s_at--536--8651Chr08:26772805..26772829 (25 bp)
TGGGCGATGCAGAACGTGTACAACG
LOC_Os08g42570
Os.55623.1.S1_s_at--844--9031Chr08:26772812..26772836 (25 bp)
TGCAGAACGTGTACAACGACCTCTT
LOC_Os08g42570
Os.55623.1.S1_s_at--271--1431Chr08:26772815..26772839 (25 bp)
AGAACGTGTACAACGACCTCTTCCT
LOC_Os08g42570
Os.55623.1.S1_s_at--725--9451Chr08:26772902..26772926 (25 bp)
TCGGCCGCGACTACCTCGTCACAAG
LOC_Os08g42570
Target Sequence 
ACAAGTGGCGCTACCTCCGCGACCTCCTCGCCCGCAACAACCCCGGCGGCGACGCGCCGCTCGCCGCCTACGCCCGCGCC
GCCCGCGAGCTCGAGCCCGCGGCGCGCCGCCGCTACGCCGAGCCCGTCGCACTCCCGCCGCGGGAGTTCGCCGAGATGCT
CCTCCTCGACGGCTGCTTCATCGTCGAGTTCTTCCTCAAGGGCGAGGACCGCGCCGCCGACGCGCTCGTCGACGCCGCGT
GGGCGATGCAGAACGTGTACAACGACCTCTTCCTCCTCGAGAACCAGCTCCCCTTCTTCGTCGTCGAGCGCTTCTACGAC
ATCGCCACCGGCGGCCTCGGCCGCGACTACCTCGTCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55623.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis