Browse Element(s) Details


Os.5571.1.S1_at

Description gb:AK103103.1
DB_XREF= gi:32988312
TID=Os.5571.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118O11, full insert sequence.
FL= gb:AK103103.1 gb:AK060523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0124011/11Ankyrin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01190Os.20298.1.S1_at11/112+110763..112358expressed protein
LOC_Os02g01190OsAffx.27050.1.S1_x_at2/112+110763..112358expressed protein
LOC_Os02g01200NANA2+112766..113650Glutaredoxin family protein, expressed
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os02g01240Os.5571.1.S1_at11/112+132984..135155Ankyrin-1, putative, expressed
LOC_Os02g01250Os.9579.1.S1_at11/112+135302..138097Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0000062molecular_functionacyl-CoA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5571.1.S1_at--129--3851Chr02:134011..134035 (25 bp)
CTGCATTTGGCTGCTCAGGGTGGAC
LOC_Os02g01240
Os.5571.1.S1_at--552--1471Chr02:134722..134746 (25 bp)
AGAATGGTGCATTCTTGCCACCTGA
LOC_Os02g01240
Os.5571.1.S1_at--794--5271Chr02:134750..134774 (25 bp)
GAATGACCACAGGTTCAATCCTCCT
LOC_Os02g01240
Os.5571.1.S1_at--230--3771Chr02:134773..134797 (25 bp)
CTCTCCATTACTGCTCTGGATTGGA
LOC_Os02g01240
Os.5571.1.S1_at--549--8811Chr02:134834..134858 (25 bp)
TGATTCGACCGGTGAAACTTCTCTG
LOC_Os02g01240
Os.5571.1.S1_at--199--2351Chr02:134877..134901 (25 bp)
AAAGCAATCTCCTCAGTCTGGCAAA
LOC_Os02g01240
Os.5571.1.S1_at--576--6151Chr02:134902..134926 (25 bp)
GAGGTCAATCTTGGATCAACAGAGT
LOC_Os02g01240
Os.5571.1.S1_at--895--1991Chr02:134933..134957 (25 bp)
ACATCAAGGGTCACGTTTACTTTGT
LOC_Os02g01240
Os.5571.1.S1_at--131--831Chr02:134997..135021 (25 bp)
ATGGTACTAGCATGCATTGCGATGT
LOC_Os02g01240
Os.5571.1.S1_at--946--4931Chr02:135053..135077 (25 bp)
GCATTGTGTTCTTACTACACTGGTA
LOC_Os02g01240
Os.5571.1.S1_at--316--3411Chr02:135107..135131 (25 bp)
CAGAATCAATATCCGGTTTGCGTCC
LOC_Os02g01240
Target Sequence 
CTGCATTTGGCTGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTACTGGAGCGGGGTGCAAATATTGATGCTCGCAC
AAAAGGAGCTTGTGGATGGACCCCTNCTACATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAG
AATGGTGCATTCTTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGC
ATATGAGATGAAGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGNGCTCGGAGAGCTAGAGGAAAGCAA
TCTCCTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTTTACTTTGTGAAATT
GGAACGAATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTT
TCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTNCTACACATTCTTAATATCAGAATCAATATCCGGT
TTGCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis