Browse Element(s) Details


Os.55734.1.S1_at

Description gb:AK108683.1
DB_XREF= gi:32993892
TID=Os.55734.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B10, full insert sequence.
FL= gb:AK108683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0377011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03740NANA5+1621601..1622602hypothetical protein
LOC_Os05g03750Os.23808.1.S1_x_at11/115+1630055..1632403expressed protein
LOC_Os05g03750Os.23808.3.S1_x_at9/115+1630055..1632403expressed protein
LOC_Os05g03760Os.11774.1.S1_s_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03760Os.11774.1.S1_x_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03770Os.55734.1.S1_at11/115+1644535..1646940expressed protein
LOC_Os05g03780Os.8659.1.S1_at11/115+1653517..1657080cation diffusion facilitator family transporter containing protein, expressed
LOC_Os05g03790OsAffx.26720.1.S1_at11/115+1660031..1660321hypothetical protein
LOC_Os05g03800OsAffx.14528.1.S1_x_at11/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.1.S1_at10/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.2.S1_x_at6/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_x_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800Os.5212.1.S1_at1/115+1664890..1671989transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55734.1.S1_at--990--2451Chr05:1645065..1645089 (25 bp)
AACAAGTCTGAGGTGTTCATCCCGG
LOC_Os05g03770
Os.55734.1.S1_at--1037--7451Chr05:1645040..1645064 (25 bp)
GTGTGTCTGGCACTCTGCAGTTCAT
LOC_Os05g03770
Os.55734.1.S1_at--174--3451Chr05:1645023..1645047 (25 bp)
CAGTTCATCTGCAGGCTGGTTGAGG
LOC_Os05g03770
Os.55734.1.S1_at--149--71Chr05:1644954..1644978 (25 bp)
ATTGCAGCTGACATGGTCTCTGAGA
LOC_Os05g03770
Os.55734.1.S1_at--460--6051Chr05:1644933..1644957 (25 bp)
GAGATTCTTGATCAGCTCACATCTG
LOC_Os05g03770
Os.55734.1.S1_at--56--5651Chr05:1644907..1644931 (25 bp)
GACAGCTGATGAACTCATGCAGACA
LOC_Os05g03770
Os.55734.1.S1_at--89--4471Chr05:1644851..1644875 (25 bp)
GCCTCATCTCCATGAAACATCCAAG
LOC_Os05g03770
Os.55734.1.S1_at--951--2071Chr05:1644835..1644859 (25 bp)
ACATCCAAGCTTCAGGGTTGATCGA
LOC_Os05g03770
Os.55734.1.S1_at--257--7871Chr05:1644724..1644748 (25 bp)
GGTTCAGAAAATCTCGAGCCCGAAT
LOC_Os05g03770
Os.55734.1.S1_at--447--10511Chr05:1644675..1644699 (25 bp)
TTCAAGGCTGTAACCATATGCTAGT
LOC_Os05g03770
Os.55734.1.S1_at--244--7431Chr05:1644555..1644579 (25 bp)
GTGTTTTCACTCTATGGTTCATATT
LOC_Os05g03770
Target Sequence 
AACAAGTCTGAGGTGTTCATCCCGGGTGTGTCTGGCACTCTGCAGTTCATCTGCAGGCTGGTTGAGGAAGATCTGAACAG
CGTGATATGGTTAACTAGTGATTCTGAGAACATTGCAGCTGACATGGTCTCTGAGATTCTTGATCAGCTCACATCTGAGA
CAGCTGATGAACTCATGCAGACAGGTTCTGAAACTGTACATTCTTCACCTGGCCGCCTCATCTCCATGAAACATCCAAGC
TTCAGGGTTGATCGAAATATGCAGGCAATTCGAAGCAACTGAACAATCTCAAGCTCTCAACAACATGAGGAGAAGATTGG
AGAATTGTAGCAGAGACAACAGGTTCAGAAAATCTCGAGCCCGAATATGCAATGAAATTAATTCTCTCCTTTCAAGGCTG
TAACCATATGCTAGTAATATGCAGTGAAATTGTACATGTTTACTTTAACTCCATGTACAAGCATAAACCTAACAACATGT
ATATTAGTTAGTTGATGTAAATTAGCACATGTGTTTTCACTCTATGGTTCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis