Browse Element(s) Details


Os.5577.2.S1_a_at

Description gb:AK071726.1
DB_XREF= gi:32981749
TID=Os.5577.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110I24, full insert sequence.
FL= gb:AK059342.1 gb:AK059807.1 gb:AK071726.1 gb:AK060875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5957011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein
LOC_Os04g59580Os.48291.1.S1_at11/114+35211264..35213719Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g59590Os.53076.1.S1_at11/114+35215925..35220062dehydration-responsive protein, putative, expressed
LOC_Os04g59600Os.50410.1.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.2.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S1_x_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S2_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59610Os.52938.1.S1_a_at11/114+35224850..35226493expressed protein
LOC_Os04g59620OsAffx.14482.1.S1_at11/114+35226841..35240731SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5577.2.S1_a_at--402--9831Chr04:35210376..35210400 (25 bp)
TACAACCAACAATAGGGATATATAT
LOC_Os04g59570
Os.5577.2.S1_a_at--863--231Chr04:35210397..35210421 (25 bp)
ATATAGAATGGAGCACTGTGATGTT
LOC_Os04g59570
Os.5577.2.S1_a_at--791--3331Chr04:35210410..35210434 (25 bp)
CACTGTGATGTTAGATGTGCAAAGT
LOC_Os04g59570
Os.5577.2.S1_a_at--394--1311Chr04:35210422..35210446 (25 bp)
AGATGTGCAAAGTAGCTTGAACTAG
LOC_Os04g59570
Os.5577.2.S1_a_at--1008--6951Chr04:35210433..35210457 (25 bp)
GTAGCTTGAACTAGGGACTCATATT
LOC_Os04g59570
Os.5577.2.S1_a_at--1115--5471Chr04:35210440..35210464 (25 bp)
GAACTAGGGACTCATATTAAGCTGC
LOC_Os04g59570
Os.5577.2.S1_a_at--874--1071Chr04:35210445..35210469 (25 bp)
AGGGACTCATATTAAGCTGCTTCTC
LOC_Os04g59570
Os.5577.2.S1_a_at--664--2011Chr04:35210449..35210473 (25 bp)
ACTCATATTAAGCTGCTTCTCTCCG
LOC_Os04g59570
Os.5577.2.S1_a_at--114--10211Chr04:35210454..35210478 (25 bp)
TATTAAGCTGCTTCTCTCCGATGAA
LOC_Os04g59570
Os.5577.2.S1_a_at--765--10491Chr04:35210456..35210480 (25 bp)
TTAAGCTGCTTCTCTCCGATGAAGC
LOC_Os04g59570
Os.5577.2.S1_a_at--245--1611Chr04:35210459..35210483 (25 bp)
AGCTGCTTCTCTCCGATGAAGCTTG
LOC_Os04g59570
Target Sequence 
TACAACCAACAATAGGGATATATATAGAATGGAGCACTGTGATGTTAGATGTGCAAAGTAGCTTGAACTAGGGACTCATA
TTAAGCTGCTTCTCTCCGATGAAGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5577.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis