Browse Element(s) Details

Os.55822.1.A1_at

Description

gb:AK108850.1
DB_XREF= gi:32994059
TID=Os.55822.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A06, full insert sequence.
FL= gb:AK108850.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g08310	10/11	Protein phosphatase 2A regulatory B subunit containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g08270	Os.50272.1.S1_s_at	11/11	1	+	4048683..4054510	aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280	Os.25067.1.S1_a_at	11/11	1	+	4056312..4059990	expressed protein
LOC_Os01g08290	Os.25067.2.S1_at	7/11	1	+	4060870..4063121	integral membrane family protein, putative, expressed
LOC_Os01g08300	OsAffx.23160.1.S1_s_at	11/11	1	+	4063149..4064121	expressed protein
LOC_Os01g08300	Os.51295.1.S1_at	11/11	1	+	4063149..4064121	expressed protein
LOC_Os01g08300	Os.46584.1.S1_x_at	1/11	1	+	4063149..4064121	expressed protein
LOC_Os01g08310	Os.55822.1.A1_at	10/11	1	+	4065438..4067133	Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310	OsAffx.10962.1.S1_x_at	7/11	1	+	4065438..4067133	Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310	OsAffx.10962.2.S1_at	7/11	1	+	4065438..4067133	Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08320	Os.9069.1.S1_at	11/11	1	+	4070718..4073240	Auxin-induced protein 22B, putative, expressed
LOC_Os01g08330	NA	NA	1	+	4078118..4079482	Eukaryotic aspartyl protease family protein
LOC_Os01g08340	Os.54294.1.S1_at	11/11	1	+	4087875..4091623	zinc finger family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0007165	biological_process	signal transduction
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0008601	molecular_function	protein phosphatase type 2A regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55822.1.A1_at--568--187	1	Chr01:4065996..4066020 (25 bp)	ACGAGCACTTGTTCGATATGATCTC	LOC_Os01g08310
Os.55822.1.A1_at--652--637	1	Chr01:4065977..4066001 (25 bp)	GATCTCCCAAAATCGTCAGGTGATC	LOC_Os01g08310
Os.55822.1.A1_at--941--243	1	Chr01:4065969..4065993 (25 bp)	AAAATCGTCAGGTGATCCTACCGAT	LOC_Os01g08310
Os.55822.1.A1_at--580--417	1	Chr01:4065655..4065679 (25 bp)	CCCACTGTGACATGACATGTGGATC	LOC_Os01g08310
Os.55822.1.A1_at--327--751	1	Chr01:4065637..4065661 (25 bp)	GTGGATCAAATATACTCCATTTCCA	LOC_Os01g08310
Os.55822.1.A1_at--1097--491	1	Chr01:4065578..4065602 (25 bp)	GCTTGCTTCTCCTGGGACTATACAG	LOC_Os01g08310
Os.55822.1.A1_at--800--927	1	Chr01:4065569..4065593 (25 bp)	TCCTGGGACTATACAGAAGGCATTT	LOC_Os01g08310
Os.55822.1.A1_at--36--531	1	Chr01:4065554..4065578 (25 bp)	GAAGGCATTTTGTTACCTTCGTAAG	LOC_Os01g08310
Os.55822.1.A1_at--16--419	1	Chr01:4065525..4065549 (25 bp)	CCCCATGTCAAAGTCTGTAATTAAT	LOC_Os01g08310
Os.55822.1.A1_at--1096--1035	1	Chr01:4065456..4065480 (25 bp)	TTTTTGTGGTGTATTCTCGAGTAAT	LOC_Os01g08310
Os.55822.1.A1_at--715--607	1	Chr01:4065438..4065462 (25 bp)	GAGTAATGGGCATTGCTTTCTAGGC	NONE

Target Sequence

ACGAGCACTTGTTCGATATGATCTCCCAAAATCGTCAGGTGATCCTACCGATCATATATCCAGCTCTGNAGAGGAACACC
CGTTGGCACNGGAATCAGTCGGTCCTCAATGTTACCCTGAATGTCAAGAAAATGTTCTTGNACATGGACGAGAGATTGCT
CCTGNCCTGCCAGAACAACTTCCAAGCGGAAGAAGAGAAGCGAGCCGCGACCGAGGAGCGGCGAAGGCTGATGTGGGAGC
AGCTGGAGCGGAATGCCGCTGCGGCATGCCATCCACATCCAGTGATCACCACTACTGACTCAAGCTTTCCTTCACCCCCT
TCATCAACTCCTCTGGTAGCTCCCACTGTGACATGACATGTGGATCAAATATACTCCATTTCCACTTATTTGTTAGCTAG
CTAGATGATGATGAAGTTGCTTGCTTCTCCTGGGACTATACAGAAGGCATTTTGTTACCTTCGTAAGGCCCCCCCATGTC
AAAGTCTGTAATTAATAGTTGATGGTTTGAGGACNAAATGACACTTGATTTTTTCTTCTTTTTTTGTGGTGTATTCTCGA
GTAATGGGCATTGCTTTCTAGGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis