Browse Element(s) Details


Os.55842.1.S1_at

Description gb:AK108879.1
DB_XREF= gi:32994088
TID=Os.55842.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-D05, full insert sequence.
FL= gb:AK108879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g108201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55842.1.S1_at--285--3651NONE
CTTCGTCGATGCATATGCGTCCTAA
NONE
Os.55842.1.S1_at--975--7571NONE
GGGCTATCATCATGCGCGTGGAAAC
NONE
Os.55842.1.S1_at--397--4231NONE
CCGTCGCCCCTACAATGGAAATGGA
NONE
Os.55842.1.S1_at--515--2951NONE
AATGGAAACAGCAACGGTCCTCGTT
NONE
Os.55842.1.S1_at--489--8071NONE
GGAGCAGCAAAAGCGCATCCTCGGT
NONE
Os.55842.1.S1_at--877--9431NONE
TCGGTGAGCGTCTGTATCCCTTGGT
NONE
Os.55842.1.S1_at--623--6351NONE
GATGCCGAGCATGCCAGCAAGATTA
NONE
Os.55842.1.S1_at--740--7771Chr02:5746662..5746684 (22 bp)
GGTGAATTGCTGCATCTCCTGGAGA
LOC_Os02g10820
Os.55842.1.S1_at--360--4511NONE
GCCGATGCAGCGTCCAAGAATTGAA
NONE
Os.55842.1.S1_at--847--10731NONE
TTGAACGCAGTAGATTCTCCTCCTT
NONE
Os.55842.1.S1_at--412--9271NONE
TCCTCCTTGCATTCTTTTTCAATCA
NONE
Target Sequence 
CTTCGTCGATGCATATGCGTCCTAATCGTCCCATGCGAGGGGGCTATCATCATGCGCGTGGAAACGGCCCTATGAATGGG
GGAAATTCTTCTTTCGTCCCTCCTCAAACTGGCTTCCGTCGCCCCTACAATGGAAATGGAAATGGAAATGGAAACAGCAA
CGGTCCTCGTTATGGGGGTCCCAGTGCTCGTGGCCCTCGTCCTGAGTATGGAGCTTTCGGTCCGGGTGCGCCCCTCACTG
CTGCCGCTTTGGCTGCCGCTCCTCCGGAGCAGCAAAAGCGCATCCTCGGTGAGCGTCTGTATCCCTTGGTGGCCATGCGC
GATGCCGAGCATGCCAGCAAGATTACTGGGATGCTCTTGGAGATGGACAATGGTGAATTGCTGCATCTCCTGGAGAGCCC
TGACGCTCTTGCATCCAAGATCGGCGAGGCACAGGAAGTCCTCCGTCAGCATCAGCAGTCGCAGCAGCCGGCCGCCGATG
CAGCGTCCAAGAATTGAACGCAGTAGATTCTCCTCCTTGCATTCTTTTTCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis