Browse Element(s) Details


Os.55944.1.S1_at

Description gb:AK109030.1
DB_XREF= gi:32994239
TID=Os.55944.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-B12, full insert sequence.
FL= gb:AK109030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0615011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06110OsAffx.18703.1.S1_at11/1111+2903838..2904566hypothetical protein
LOC_Os11g06130Os.57573.1.S1_at11/1111+2905313..2914028PHD-finger family protein, expressed
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein
LOC_Os11g06159NANA11+2933102..2933350NA
LOC_Os11g06170Os.53732.1.S1_a_at11/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06170Os.53732.2.S1_at4/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06180OsAffx.18704.1.S1_at11/1111+2946066..2948127GRAS family transcription factor containing protein
LOC_Os11g06190Os.24665.1.S1_at11/1111+2948973..2954715expressed protein
LOC_Os11g06190Os.24665.1.S2_at10/1111+2948973..2954715expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55944.1.S1_at--146--4231Chr11:2929234..2929258 (25 bp)
CCGCATCCTGGTGGCAACAAGTGGC
LOC_Os11g06150
Os.55944.1.S1_at--717--3891Chr11:2929241..2929265 (25 bp)
CTGGTGGCAACAAGTGGCCGCCGCT
LOC_Os11g06150
Os.55944.1.S1_at--210--2651Chr11:2929310..2929334 (25 bp)
AACCAGGCAACAAGTGGCCGCCGCT
LOC_Os11g06150
Os.55944.1.S1_at--451--5331Chr11:2929528..2929552 (25 bp)
GAAGTGCACGAGTGATTCATGCAAA
LOC_Os11g06150
Os.55944.1.S1_at--200--2831Chr11:2929581..2929605 (25 bp)
AAGTAGTATCAAATTAAGCCTCGTA
LOC_Os11g06150
Os.55944.1.S1_at--13--9771Chr11:2929595..2929619 (25 bp)
TAAGCCTCGTAAGATTTAATCATTT
LOC_Os11g06150
Os.55944.1.S1_at--694--3131Chr11:2929647..2929671 (25 bp)
AATTTTGAATTTGGACGGCATTTGT
LOC_Os11g06150
Os.55944.1.S1_at--318--8291Chr11:2929663..2929687 (25 bp)
GGCATTTGTCCAAGATGATTGATAT
LOC_Os11g06150
Os.55944.1.S1_at--694--6511Chr11:2929683..2929707 (25 bp)
GATATTTGAACTTTTCCCCATGAGG
LOC_Os11g06150
Os.55944.1.S1_at--619--3651Chr11:2929693..2929717 (25 bp)
CTTTTCCCCATGAGGGCAAGGTGAT
LOC_Os11g06150
Os.55944.1.S1_at--174--5191Chr11:2929720..2929744 (25 bp)
GAATAAAGCAACCTTACCGTTGAGT
LOC_Os11g06150
Target Sequence 
CCGCATCCTGGTGGCAACAAGTGGCCGCCGCTGCCGCCGTTCCCGTCTCACCCGCCGCCGACGCCGGCATGGCCGCAACC
AGGCAACAAGTGGCCGCCGCTGCCGCCGTTCCCGTCCCACCCGCCGCCGACGCCGGCATGGCCGCACCCGGGAAACCAGT
GGCCGCCACTGCCGCCGTTCCCGTTCCACCCTCCGCCGATGCCGGCATGGCCGCACCCCGGCAACCAGTGGCCGCCACTG
CCGCCGTTCCACGGCAGCGATGTGCCACCGGCGACGAAGAAGATCACCAAGGAAGAAGTGCACGAGTGATTCATGCAAAA
ATGCTTGGTGATCAACTGAAGGAAATTAAGTAGTATCAAATTAAGCCTCGTAAGATTTAATCATTTAGATAACACAAAAA
ATTAGTACGAATAAATTTTGAATTTGGACGGCATTTGTCCAAGATGATTGATATTTGAACTTTTCCCCATGAGGGCAAGG
TGATATGAATAAAGCAACCTTACCGTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis