Browse Element(s) Details


Os.55986.1.S1_x_at

Description gb:AK109091.1
DB_XREF= gi:32994300
TID=Os.55986.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A04, full insert sequence.
FL= gb:AK109091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3530011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein
LOC_Os10g35280Os.46653.1.S1_at11/1110+18522637..18527636Uncharacterised protein family containing protein, expressed
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein
LOC_Os10g35350OsAffx.13097.1.S1_s_at11/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35350Os.46613.1.S2_at4/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35360OsAffx.7995.1.S1_x_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35360OsAffx.7995.1.S1_at11/1110+18568978..18569400hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55986.1.S1_x_at--147--6711Chr10:18544434..18544458 (25 bp)
GTTCCCCGATCTCCTGAGGCAGATG
LOC_Os10g35300
Os.55986.1.S1_x_at--536--5831Chr10:18544364..18544388 (25 bp)
GACCTGACCGCGTGGCAGCAAATGG
LOC_Os10g35300
Os.55986.1.S1_x_at--621--5131Chr10:18544347..18544371 (25 bp)
GCAAATGGCGGCGTTCGCGGCTCCA
LOC_Os10g35300
Os.55986.1.S1_x_at--815--8391Chr10:18544220..18544244 (25 bp)
TGGCTGCAAGATGACATGCCCGGTC
LOC_Os10g35300
Os.55986.1.S1_x_at--20--611Chr10:18544205..18544229 (25 bp)
ATGCCCGGTCTAGATGGTTCATGTT
LOC_Os10g35300
Os.55986.1.S1_x_at--1138--2751Chr10:18544180..18544204 (25 bp)
AAGTAACCCGTGCTTGTATTGATAC
LOC_Os10g35300
Os.55986.1.S1_x_at--782--311Chr10:18544153..18544177 (25 bp)
ATACGTATACGGAGCTACGGATATA
LOC_Os10g35300
Os.55986.1.S1_x_at--185--4971Chr10:18544069..18544093 (25 bp)
GCATACATGCATACACATGCGCTAT
LOC_Os10g35300
Os.55986.1.S1_x_at--180--3231Chr10:18544000..18544024 (25 bp)
CAAGAGCCTATGACTGTACTAGTGT
LOC_Os10g35300
Os.55986.1.S1_x_at--336--9631Chr10:18543966..18543990 (25 bp)
TCAGGTTATTAACTCGTGGGTATAT
LOC_Os10g35300
Os.55986.1.S1_x_at--457--7691Chr10:18543949..18543973 (25 bp)
GGGTATATGTTGACCTACTGTAGTT
LOC_Os10g35300
Target Sequence 
GTTCCCCGATCTCCTGAGGCAGATGCTGATGGCGCCGGCTACCGCCGGTGGCGGAGGCGGCTACAGCATCGACCTGACCG
CGTGGCAGCAAATGGCGGCGTTCGCGGCTCCACCTCAGGCCGCCACCGGCGATGTCGGCGGCGCGGTCGGAGCGGCGTCG
ACGGCGGCGCCGGACGCGAACTGCGGCGGCGGCGGCGTGCAGTACTGGAACGGGTGGCTGCAAGATGACATGCCCGGTCT
AGATGGTTCATGTTAAGTAACCCGTGCTTGTATTGATACGTATACGTATACGGAGCTACGGATATATATACCGAATACGT
ATACGTATATATATGTGTGTGTATATGCATGTATAGCCTATGTATGCATACATGCATACACATGCGCTATGAAAGTATAT
ACGTATGTCGTATGCGCATACTAAATTAGCGTAACAAGAGCCTATGACTGTACTAGTGTAGTTTGGATTCAGGTTATTAA
CTCGTGGGTATATGTTGACCTACTGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55986.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis